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Sample GSM1572398 Query DataSets for GSM1572398
Status Public on Jun 03, 2015
Title genomic DNA from Cartilage of a 112 year old female subject (Sample17)
Sample type genomic
Source name Cartilage
Organism Homo sapiens
Characteristics tissue: Cartilage
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 76.9047142287681
cor sample vs gold standard: 0.882629280860744
mean abs difference sample vs gold standard: 0.0870734408492206
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3482669
cg00000108 0.9257187
cg00000109 0.6658933
cg00000165 0.1816609
cg00000236 0.5510585
cg00000289 0.6034483
cg00000292 0.422814
cg00000321 0.2781355
cg00000363 0.3598741
cg00000622 0.02284744
cg00000658 0.7806298
cg00000714 0.1156504
cg00000721 0.8715979
cg00000734 0.06233226
cg00000769 0.04384449
cg00000807 0.6902602
cg00000884 0.7571272
cg00000905 0.0814356
cg00000924 0.5941355
cg00000948 0.8903667

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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