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Sample GSM156757 Query DataSets for GSM156757
Status Public on Dec 15, 2010
Title MH-S_IL-4_rep01
Sample type RNA
 
Source name ATCC_CRL-2019, IL-4 treated
Organism Mus musculus
Characteristics strain:BALB/c Mouse', 'cell type:alveolar macrophage', 'source: cell culture', 'condition: IL-4 treated
Extracted molecule total RNA
Extraction protocol trizol extraction followed by qiagen RNeasy total RNA cleanup protocol
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using affy GCS3000
Description Intensity of hybridization for each probe pair was computed by GCOS 1.2 software (Affymetrix). (For more detailed methods, please refer to the website of the Malaria Research Institute Gene Array Core Facility (MRI-GACF) at the Johns Hopkins Bloomberg School of Public Health http://jhmmi.jhsph.edu)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jan 18, 2007
Last update date Dec 15, 2010
Contact name Joshua J Reece
E-mail(s) josh.reece@gmail.com
Organization name Johns Hopkins University BSPH
Department MMI
Lab Lab of Alan Scott
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL1261
Series (1)
GSE6785 Activation and Function of Alternatively and Classically Activated MH-S Alveolar Macrophages

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 398.1 P
AFFX-BioB-M_at 558.5 P
AFFX-BioB-3_at 383.4 P
AFFX-BioC-5_at 759.9 P
AFFX-BioC-3_at 788.3 P
AFFX-BioDn-5_at 2514.4 P
AFFX-BioDn-3_at 5776.7 P
AFFX-CreX-5_at 12660.5 P
AFFX-CreX-3_at 14067.9 P
AFFX-DapX-5_at 10.1 A
AFFX-DapX-M_at 56.2 A
AFFX-DapX-3_at 60.9 A
AFFX-LysX-5_at 19.6 A
AFFX-LysX-M_at 18.2 A
AFFX-LysX-3_at 15.4 A
AFFX-PheX-5_at 6.8 A
AFFX-PheX-M_at 6.2 A
AFFX-PheX-3_at 52.1 A
AFFX-ThrX-5_at 10.2 A
AFFX-ThrX-M_at 60.3 A

Total number of rows: 45101

Table truncated, full table size 831 Kbytes.




Supplementary file Size Download File type/resource
GSM156757.CEL.gz 4.3 Mb (ftp)(http) CEL

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