|
| Status |
Public on Oct 31, 2014 |
| Title |
genomic DNA from great saphenous vein 6 |
| Sample type |
genomic |
| |
|
| Source name |
great saphenous vein 6
|
| Organism |
Homo sapiens |
| Characteristics |
parient id: 6
gender: Male
age: 54
sample type: great saphenous vein
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Tissue samples were homogenized and digested with proteinase K, DNA from tissue and whole blood samples was extracted using standard phenol/chloroform method
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
normal tissue of great saphenous vein, patient 6
|
| Data processing |
BeadStudio software v3.2, R 3.0.1 (Bioconductor v2.14, 'lumi' package)
|
| |
|
| Submission date |
Oct 30, 2014 |
| Last update date |
Oct 31, 2014 |
| Contact name |
Anton Vladimirovich Markov |
| E-mail(s) |
anton.markov@medgenetics.ru
|
| Phone |
+7 (3822) 51-72-72
|
| Organization name |
Research Institute of Medical Genetics
|
| Lab |
Laboratory of Population Genetics
|
| Street address |
Nab. Ushaiki, 10
|
| City |
Tomsk |
| State/province |
Tomskaya oblast |
| ZIP/Postal code |
634050 |
| Country |
Russia |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE62867 |
A comparison of genome-wide DNA methylation patterns between different tissues from patients with coronary heart disease |
|
