|
Status |
Public on Dec 01, 2014 |
Title |
first visit [GG2_0109] |
Sample type |
RNA |
|
|
Source name |
whole peripheral blood
|
Organism |
Homo sapiens |
Characteristics |
age: 35 Sex: M body mass index: 32.4 ethnicity: ASN gad7 score: 1 anxiety case/control: control hybridization batch: B rin: 9.4
|
Treatment protocol |
na
|
Growth protocol |
na
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from whole peripheral blood using Tempus Spin RNA Isolation kit. Quality control was performed using Agilent's Bioanalyzer.
|
Label |
Cy3
|
Label protocol |
Illumina BeadArray protocol
|
|
|
Hybridization protocol |
Illumina's BeadArray protocol
|
Scan protocol |
Illumina's BeadArray protocol and GenomeStudio (Gene expression module)
|
Description |
none
|
Data processing |
The raw log2 transformed probes were normalized by ANOVA fitting technical effects of date of hybridization and RIN score. The reason why there are so many missing probes in the normalized dataset is because they are below the expression threshold and so not included in the normalization process.
|
|
|
Submission date |
Sep 23, 2014 |
Last update date |
Dec 01, 2014 |
Contact name |
Aliza P. Wingo |
Organization name |
Atlanta VAMC/Emory University
|
Department |
Psychiatry
|
Street address |
1670 Clairmont Rd
|
City |
Decatur |
State/province |
GA |
ZIP/Postal code |
30033 |
Country |
USA |
|
|
Platform ID |
GPL10558 |
Series (1) |
GSE61672 |
Blood gene expression profiles associated with symptoms of generalized anxiety disorder |
|