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Sample GSM15079 Query DataSets for GSM15079
Status Public on Jan 15, 2004
Title Day 3 Mouse #31 - 1st replicate
Sample type RNA
 
Channel 1
Source name Total RNA from kidneys of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from kidneys of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from kidneys of five normal BALB/c mice.
Total RNA was extracted from kidneys of BALB/c mice injected with anti-GBM antibody for 3 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE955 Day 3 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which corresponds to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 12320.2 7358.56 7220 332.539 807.411 809 20.558 1247.84 1493.24 1481 88.9121 581.674 577 29.4717 -0.994459 0
2 35.2765 801.5 804 16.2561 801.94 803 18.4428 39.0963 562.083 563 29.3952 583.04 585 30.3631 0 0
3 56.5154 772.37 768 21.7983 801.031 798.5 19.2236 24.8893 542.185 538 25.8547 577.117 578 29.7096 0 0
4 39.5714 809.05 809.5 13.2882 804.262 805 18.3812 53.4006 575.55 574 33.1559 575.436 576 29.1731 0.130165 0
5 58.1827 779.087 777 13.3175 802.401 803.5 19.7907 22.6129 538.783 536 24.5208 573.309 573 26.9923 0 0
6 59.0083 819.038 816 19.2156 802.083 802 16.9957 70.9491 588.538 576.5 30.0003 577.648 579 25.8273 0.0800334 0
7 69.6918 776 774 21.4009 809.22 810 23.7055 21.2477 551.815 550 25.158 581.043 580 25.3627 0 0
8 8346.56 5249.43 5108.5 564.441 816.745 818 20.1228 16013.8 12735.9 12416.5 1790.17 579.186 580 24.0107 0.282988 0.940065788
9 322.15 965.32 971 19.7752 803.943 802 19.1286 291.54 750.72 755 33.6954 576.031 580 26.3706 -0.0433599 -0.14403847
10 153.438 883.545 884.5 16.8289 808.956 809 18.8274 135.723 629.182 623 33.7366 575.9 577 24.4181 -0.0532797 -0.176991332
11 74.1218 835.259 838 21.5613 808.581 811 19.6873 84.6379 588.593 589 25.1675 569.406 568.5 25.7575 0.0576191 0
12 41565.4 22627.2 22943 1828.15 807.994 807 21.9804 28144.3 22282.4 22068 2336.4 569.487 569 28.6159 -0.169342 -0.562541947
13 161.355 886.962 886 21.1971 807.306 806 23.4852 115.81 599.346 598 32.9071 559.83 559 23.42 -0.144036 -0.478477235
14 113.504 858.63 853 18.8519 807.35 809 21.3715 107.64 599 597 30.9926 565.401 567 25.3933 -0.0230359 -0.076523603
15 3875.91 2859.16 2804 273.843 807.208 807 19.5648 20073.9 15796.9 15212 2159.85 568.955 571 25.3117 0.714257 2.372710395
16 230.735 918.963 904 38.0389 803.994 804 17.0611 207.126 671.074 670 32.2167 563.106 562 25.9323 -0.0468795 -0.155730328
17 988.328 1314.04 1290 71.0698 803.509 803 20.1035 812.994 1131.62 1109 75.093 552.267 552 25.0444 -0.0848139 -0.281745677
18 141.855 873.423 875 19.8478 805.348 806.5 20.8565 123.994 599.192 603.5 27.023 554.278 556 28.0808 -0.0584424 -0.19414145
19 114.58 852.769 854 19.7267 800.865 800 18.0425 123.464 603.192 597 25.1746 558.929 559 26.5993 0.0324291 0.107727138
20 237.599 924.522 921 26.0661 805.813 808.5 21.5883 206.367 666.565 671 27.5348 558.925 558 24.7825 -0.0612045 -0.203316948

Total number of rows: 16281

Table truncated, full table size 1934 Kbytes.




Supplementary data files not provided
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