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Sample GSM1505081 Query DataSets for GSM1505081
Status Public on Sep 17, 2014
Title SAT_56
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 44
bmi: 54.19850201
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.652636546
cg00001583 0.063348589
cg00002028 0.067986966
cg00002719 0.198499235
cg00002837 0.309714434
cg00003202 0.036798307
cg00003287 0.191577731
cg00007036 0.917153559
cg00007898 0.051264015
cg00008004 0.101372561
cg00008647 0.087424414
cg00009292 0.109438958
cg00011717 0.912433136
cg00014168 0.714061459
cg00015286 0.716268167
cg00016238 0.877602738
cg00017221 0.064744871
cg00017437 0.069125198
cg00021123 0.721464753
cg00021576 0.115528893

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505081_5822943029_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505081_5822943029_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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