|
| Status |
Public on Aug 08, 2014 |
| Title |
GS0005708 |
| Sample type |
genomic |
| |
|
| Source name |
normal tissue
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
sample tissue: needle biopsy
disease state: normal
age: NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Illumina chip: 5808922074
Illumina position: R05C01
|
| Data processing |
Touleimat and Tost, Epigenomics 2012
|
| |
|
| Submission date |
Aug 07, 2014 |
| Last update date |
Aug 08, 2014 |
| Contact name |
Thomas Fleischer |
| E-mail(s) |
thomas.fleischer@rr-research.no
|
| Organization name |
Oslo University Hospital
|
| Department |
Department of Cancer Genetics, Institute for Cancer Research
|
| Street address |
Ullernchausséen 70
|
| City |
Oslo |
| ZIP/Postal code |
0310 |
| Country |
Norway |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE60185 |
Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis |
|
