|
| Status |
Public on Jun 06, 2014 |
| Title |
AG_43654 |
| Sample type |
genomic |
| |
|
| Source name |
Primary brain tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
1p/19q status: codel
idh status: mut
molecular classification: CIMP-O
tissue: brain
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
|
| Label |
biotin/DNP
|
| Label protocol |
Illumina protocol.
|
| |
|
| Hybridization protocol |
Illumina protocol.
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
| Description |
Methylation data from anaplastic glioma tumor sample.
|
| Data processing |
Bioconductor (Version 2.0) package minifi (Version 1.10) using function 'preprocessIllumina'
Unmethylated and methylated signal intensities are available on series level
|
| |
|
| Submission date |
Jun 04, 2014 |
| Last update date |
Jun 06, 2014 |
| Contact name |
Martin Sill |
| E-mail(s) |
m.sill@dkfz.de
|
| Organization name |
DKFZ
|
| Department |
Division of Pediatric Neurooncology
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE58218 |
Integrated epigenetic and copy-number profiling identifies three clinically and biologically relevant groups of anaplastic glioma |
|
