GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1377998
Query DataSets for GSM1377998
Status
Public on May 03, 2014
Title
DPSC 1mM 48hr_rep 1
Sample type
RNA
Source name
dental pulp stem cells
Organism
Homo sapiens
Characteristics
cell type: adult mesenchymal stem cells
Treatment protocol
Different concentrations (0, 1, 5, 10 and 20mM) were mixed with culture medium and the cells were exposed to EtOH for 24 or 48hrs
Growth protocol
Established human dental pulp stem cells were cultured in vitro
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted by using Qiagen Rneasy kit
Label
Biotin
Label protocol
Biotin
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
EtOH treatment
Data processing
MAS5
Submission date
May 02, 2014
Last update date
May 03, 2014
Contact name
Yong Kim
E-mail(s)
thadyk@ucla.edu
Organization name
UCLA
Street address
10833 Le Conte Ave, 73-022 CHS
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL570
Series (1)
GSE57255
Effect of EtOH on transcriptome signatures in human dental pulp stem cells
Data table header descriptions
ID_REF
VALUE
MAS5
Detection
Detection p-value
Data table
ID_REF
VALUE
Detection
Detection p-value
1007_s_at
977.0327
P
0.00056169
1053_at
454.9358
P
0.002227676
117_at
80.04009
A
0.08133665
121_at
657.2332
P
0.004862762
1255_g_at
70.87875
A
0.08940502
1294_at
707.9333
P
0.000467546
1316_at
216.615
P
0.000388206
1320_at
105.3428
A
0.1171214
1405_i_at
1.380689
A
0.9891096
1431_at
95.06018
P
0.005635972
1438_at
110.089
P
0.01928729
1487_at
363.9902
P
0.03133569
1494_f_at
133.2435
P
0.01492288
1552256_a_at
342.4179
P
0.00292969
1552257_a_at
766.6203
P
0.000732422
1552258_at
72.83757
A
0.0805664
1552261_at
38.17566
A
0.432373
1552263_at
282.8846
P
0.000244141
1552264_a_at
251.0369
P
0.0012207
1552266_at
40.20492
P
0.0375977
Total number of rows:
54675
Table truncated, full table size
1704 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1377998_DPSC_1mM_48hr_1.CEL.gz
3.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
