GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1377992
Query DataSets for GSM1377992
Status
Public on May 03, 2014
Title
DPSC 20mM 24hr_rep 1
Sample type
RNA
Source name
dental pulp stem cells
Organism
Homo sapiens
Characteristics
cell type: adult mesenchymal stem cells
Treatment protocol
Different concentrations (0, 1, 5, 10 and 20mM) were mixed with culture medium and the cells were exposed to EtOH for 24 or 48hrs
Growth protocol
Established human dental pulp stem cells were cultured in vitro
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted by using Qiagen Rneasy kit
Label
Biotin
Label protocol
Biotin
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
EtOH treatment
Data processing
MAS5
Submission date
May 02, 2014
Last update date
May 03, 2014
Contact name
Yong Kim
E-mail(s)
thadyk@ucla.edu
Organization name
UCLA
Street address
10833 Le Conte Ave, 73-022 CHS
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL570
Series (1)
GSE57255
Effect of EtOH on transcriptome signatures in human dental pulp stem cells
Data table header descriptions
ID_REF
VALUE
MAS5
Detection
Detection p-value
Data table
ID_REF
VALUE
Detection
Detection p-value
1007_s_at
1236.974
P
0.000959383
1053_at
549.9273
P
0.000560613
117_at
58.4448
A
0.2039829
121_at
673.1017
P
0.004862762
1255_g_at
64.31621
A
0.07376243
1294_at
816.0354
P
0.001351628
1316_at
258.9968
P
0.003062412
1320_at
152.0194
A
0.2345566
1405_i_at
2.552844
A
0.9114963
1431_at
93.56207
P
0.003584867
1438_at
167.1334
P
0.03936541
1487_at
475.3422
P
0.02469198
1494_f_at
105.1046
M
0.06038827
1552256_a_at
324.3681
P
0.000244141
1552257_a_at
935.304
P
0.0012207
1552258_at
161.16
A
0.149658
1552261_at
20.30111
A
0.5
1552263_at
268.0427
P
0.000244141
1552264_a_at
392.713
P
0.00195313
1552266_at
55.24813
P
0.01708984
Total number of rows:
54675
Table truncated, full table size
1699 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1377992_DPSC_20mM_24hr_1.CEL.gz
3.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
