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Sample GSM136635 Query DataSets for GSM136635
Status Public on Jan 31, 2008
Title 045_07_10
Sample type RNA
Source name Pre-treatment metastatic biopsy of CRC
Organism Homo sapiens
Characteristics Tissue: Liver
Extracted molecule total RNA
Extraction protocol RNA isolated from core-needle biopsy stored in RNAlater at RT using RNeasy Mini Kit (Qiagen)according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA RNA!Sample_hyb_protocol = Standard Affymetrix procedures
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from pre-cetuximab monotherapy treatment biopsies of advanced metastatic colorectal cancer patients
Data processing Data scaled to 1500 mean signal intensity value using GCOS
Submission date Sep 15, 2006
Last update date Aug 28, 2007
Contact name Shirin Khambata Ford
Organization name Bristol-Myers Squibb Pharmaceutical Research Institute
Street address 311 Pennington-Rocky Hill Road, 3B-2.06
City Pennington
State/province NJ
ZIP/Postal code 08534
Country USA
Platform ID GPL571
Series (1)
GSE5851 Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1302.5 P 0.00039
AFFX-BioB-M_at 2720.8 P 0.000044
AFFX-BioB-3_at 1385.6 P 0.000044
AFFX-BioC-5_at 3815 P 0.000052
AFFX-BioC-3_at 5164.1 P 0.000044
AFFX-BioDn-5_at 9533.6 P 0.000044
AFFX-BioDn-3_at 19825.6 P 0.00006
AFFX-CreX-5_at 54275.9 P 0.000052
AFFX-CreX-3_at 69423.4 P 0.000044
AFFX-DapX-5_at 85.9 A 0.0727
AFFX-DapX-M_at 15.6 A 0.897835
AFFX-DapX-3_at 5.4 A 0.891021
AFFX-LysX-5_at 59.9 P 0.028457
AFFX-LysX-M_at 13.8 A 0.699394
AFFX-LysX-3_at 43.1 A 0.455413
AFFX-PheX-5_at 13.1 A 0.440646
AFFX-PheX-M_at 5.9 A 0.860538
AFFX-PheX-3_at 199.2 A 0.083592
AFFX-ThrX-5_at 17.3 A 0.724854
AFFX-ThrX-M_at 55.4 A 0.313663

Total number of rows: 22277

Table truncated, full table size 602 Kbytes.

Supplementary file Size Download File type/resource
GSM136635.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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