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Sample GSM136420 Query DataSets for GSM136420
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #31
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 31
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA, Cyclin E: POS
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.77204923
1053_at 6.07619452
117_at 6.258779088
121_at 8.250357558
1255_g_at 4.107709818
1294_at 8.680531969
1316_at 6.532650115
1320_at 4.770580459
1405_i_at 7.538788053
1431_at 3.967432241
1438_at 6.866934227
1487_at 7.725553278
1494_f_at 6.501138093
1598_g_at 9.355946524
160020_at 7.597628254
1729_at 8.473906781
1773_at 5.443628215
177_at 5.321808254
179_at 8.754642495
1861_at 5.751107821

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136420.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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