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GEO accession:
Sample GSM136418
Query DataSets for GSM136418
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #30
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 30
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.75761742
1053_at
5.527383778
117_at
6.42639947
121_at
8.403583907
1255_g_at
4.353376259
1294_at
7.696309637
1316_at
6.63447288
1320_at
4.755427959
1405_i_at
7.484094484
1431_at
4.279676294
1438_at
6.773171772
1487_at
7.508005641
1494_f_at
6.656828691
1598_g_at
10.35246469
160020_at
7.946740727
1729_at
8.503883217
1773_at
5.205786702
177_at
5.563167927
179_at
8.678077616
1861_at
5.420431451
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136418.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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