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Sample GSM136415 Query DataSets for GSM136415
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #34
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 34
race: African American
tnm_stage: IIIA
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: NEG, Her2Neu: U, Stage: IIIA, Cyclin E: unknown
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.25019846
1053_at 5.690716396
117_at 6.602683823
121_at 8.275578928
1255_g_at 4.182035641
1294_at 8.266729858
1316_at 6.320580027
1320_at 5.174259919
1405_i_at 7.981696883
1431_at 4.223048785
1438_at 7.161232896
1487_at 7.301743143
1494_f_at 6.740377858
1598_g_at 10.68323112
160020_at 7.829633963
1729_at 8.301721925
1773_at 5.256689524
177_at 5.500947455
179_at 8.651230527
1861_at 5.519357676

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136415.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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