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Sample GSM136403 Query DataSets for GSM136403
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #16
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 16
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 11.07603911
1053_at 5.734193404
117_at 6.617388454
121_at 8.250139415
1255_g_at 4.195810549
1294_at 8.701767188
1316_at 6.680321342
1320_at 4.844866159
1405_i_at 6.043201306
1431_at 4.449101905
1438_at 6.726496257
1487_at 7.379019699
1494_f_at 6.771568004
1598_g_at 9.593921944
160020_at 7.747102953
1729_at 8.199102227
1773_at 5.278174998
177_at 5.205882334
179_at 8.779766161
1861_at 6.379120271

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136403.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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