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Sample GSM136402 Query DataSets for GSM136402
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #33
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 33
race: African American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.97198582
1053_at 5.791806894
117_at 6.447526544
121_at 8.483438751
1255_g_at 4.07064187
1294_at 9.193098809
1316_at 6.718489024
1320_at 4.879940491
1405_i_at 7.020634226
1431_at 4.414686249
1438_at 6.561163626
1487_at 7.62618077
1494_f_at 6.457219458
1598_g_at 10.36214993
160020_at 7.78470115
1729_at 8.625632758
1773_at 5.302239827
177_at 5.256102912
179_at 8.662111749
1861_at 5.727288584

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136402.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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