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GEO accession:
Sample GSM136402
Query DataSets for GSM136402
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #33
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 33
race: African American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.97198582
1053_at
5.791806894
117_at
6.447526544
121_at
8.483438751
1255_g_at
4.07064187
1294_at
9.193098809
1316_at
6.718489024
1320_at
4.879940491
1405_i_at
7.020634226
1431_at
4.414686249
1438_at
6.561163626
1487_at
7.62618077
1494_f_at
6.457219458
1598_g_at
10.36214993
160020_at
7.78470115
1729_at
8.625632758
1773_at
5.302239827
177_at
5.256102912
179_at
8.662111749
1861_at
5.727288584
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136402.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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