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Sample GSM136401 Query DataSets for GSM136401
Status Public on Sep 30, 2007
Title LCM tumor epithelium sample from patient #32
Sample type RNA
Source name human breast cancer tumor epithelium
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 32
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: NEG, Her2Neu: POS, Stage: IIB, Cyclin E: NEG
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.71985868
1053_at 5.858408199
117_at 6.21937078
121_at 8.467296035
1255_g_at 4.006592946
1294_at 7.191558896
1316_at 6.825411832
1320_at 4.791445185
1405_i_at 5.378654477
1431_at 4.324820887
1438_at 7.327187615
1487_at 7.6747256
1494_f_at 6.429374257
1598_g_at 9.120760113
160020_at 7.659057986
1729_at 7.951618928
1773_at 5.299077546
177_at 5.042473357
179_at 8.626962344
1861_at 5.159930041

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136401.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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