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GEO accession:
Sample GSM136384
Query DataSets for GSM136384
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #48
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: U, ER: NEG, Her2Neu: U, Stage: IIIA, Clinical IBC: Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.31958207
1053_at
5.873394812
117_at
6.578384032
121_at
8.209484868
1255_g_at
4.198781537
1294_at
9.057946574
1316_at
6.610660003
1320_at
5.09797068
1405_i_at
7.750378511
1431_at
4.163755487
1438_at
6.957799236
1487_at
7.349471616
1494_f_at
6.6600298
1598_g_at
10.01500091
160020_at
7.760518544
1729_at
8.075979731
1773_at
5.30745527
177_at
5.073473471
179_at
8.759661822
1861_at
5.802738665
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136384.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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