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GEO accession:
Sample GSM136378
Query DataSets for GSM136378
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #42
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Alive
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIIB, Clinical IBC: Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.533505422
1053_at
5.776217869
117_at
6.819697285
121_at
8.435684903
1255_g_at
4.301376913
1294_at
7.92129315
1316_at
6.516507053
1320_at
4.921093391
1405_i_at
7.544554526
1431_at
4.144981328
1438_at
6.688671021
1487_at
7.439469855
1494_f_at
6.703990957
1598_g_at
9.767654536
160020_at
7.987303339
1729_at
8.286505241
1773_at
5.383027566
177_at
5.45138136
179_at
8.665328175
1861_at
5.211409019
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136378.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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