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GEO accession:
Sample GSM136377
Query DataSets for GSM136377
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #41
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: NEG, Stage: IIIB, Clinical IBC: No
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.42709125
1053_at
5.416924592
117_at
6.678167378
121_at
8.621651919
1255_g_at
4.388888424
1294_at
7.654712618
1316_at
6.753984024
1320_at
5.122102565
1405_i_at
7.41638012
1431_at
4.287854227
1438_at
7.180520091
1487_at
7.586429252
1494_f_at
7.014636691
1598_g_at
9.626618553
160020_at
8.198794775
1729_at
8.092598543
1773_at
5.488928179
177_at
5.375698768
179_at
8.921044974
1861_at
5.192813005
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136377.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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