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GEO accession:
Sample GSM136367
Query DataSets for GSM136367
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #34
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 34
race: African American
tnm_stage: IIIA
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: U, Stage: IIIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.351453673
1053_at
4.728828181
117_at
6.552401731
121_at
7.977295123
1255_g_at
4.050116798
1294_at
8.573933985
1316_at
6.880532149
1320_at
4.686122139
1405_i_at
6.178430776
1431_at
4.061333273
1438_at
6.578294089
1487_at
6.939601628
1494_f_at
6.453751047
1598_g_at
11.35813613
160020_at
7.740543473
1729_at
8.085824196
1773_at
4.974873498
177_at
5.199368908
179_at
8.411593774
1861_at
5.7967125
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136367.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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