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GEO accession:
Sample GSM136366
Query DataSets for GSM136366
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #27
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 27
race: African American
tnm_stage: IIB
er_status: POS
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.693770915
1053_at
4.967545603
117_at
6.061601856
121_at
7.97574027
1255_g_at
3.992695025
1294_at
7.788598797
1316_at
6.340504345
1320_at
4.623079808
1405_i_at
7.244167489
1431_at
3.861161585
1438_at
6.551066347
1487_at
6.98560326
1494_f_at
6.593900558
1598_g_at
9.962147804
160020_at
7.575737241
1729_at
8.128344302
1773_at
4.886787811
177_at
5.020744473
179_at
8.33416603
1861_at
5.099770401
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136366.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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