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GEO accession:
Sample GSM136364
Query DataSets for GSM136364
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #25
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 25
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.090772896
1053_at
4.870789588
117_at
6.33574012
121_at
8.063297307
1255_g_at
4.149496152
1294_at
7.853658756
1316_at
6.853865501
1320_at
4.544946018
1405_i_at
5.809419257
1431_at
3.991503828
1438_at
6.746990616
1487_at
7.059240279
1494_f_at
6.689961529
1598_g_at
10.57127914
160020_at
7.798906278
1729_at
8.095806985
1773_at
5.005489363
177_at
5.343619668
179_at
8.411351151
1861_at
5.228283621
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136364.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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