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Sample GSM136355 Query DataSets for GSM136355
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #16
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Deceased
patient_id: 16
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.58094321
1053_at 5.225618121
117_at 6.185656372
121_at 7.926144719
1255_g_at 3.99536712
1294_at 8.558672541
1316_at 6.705108254
1320_at 4.632673806
1405_i_at 5.373002321
1431_at 3.845614086
1438_at 6.404196579
1487_at 7.04474185
1494_f_at 6.441996635
1598_g_at 9.889191668
160020_at 7.339177617
1729_at 7.919380684
1773_at 5.212645578
177_at 5.239428389
179_at 8.576569075
1861_at 6.056632228

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136355.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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