GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136351 Query DataSets for GSM136351
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #11
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Alive
patient_id: 11
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 9.983538693
1053_at 5.079301062
117_at 6.185403486
121_at 8.005871648
1255_g_at 3.881026108
1294_at 7.813639335
1316_at 6.021142292
1320_at 4.604639119
1405_i_at 8.336160471
1431_at 3.852668399
1438_at 6.18533626
1487_at 7.084909881
1494_f_at 6.16356103
1598_g_at 10.02286951
160020_at 7.465017402
1729_at 8.095331979
1773_at 4.963025664
177_at 5.179888744
179_at 8.259297222
1861_at 5.481764594

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136351.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap