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GEO accession:
Sample GSM136350
Query DataSets for GSM136350
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #14
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 14
race: European American
tnm_stage: IIIA
er_status: N/A
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: U, Her2Neu: U, Stage: IIIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.0297985
1053_at
4.81528855
117_at
5.993771571
121_at
8.171259898
1255_g_at
3.965057153
1294_at
8.158667985
1316_at
6.504238883
1320_at
4.509119439
1405_i_at
7.687586852
1431_at
3.925222546
1438_at
6.66396059
1487_at
6.960286589
1494_f_at
6.436979955
1598_g_at
10.14561166
160020_at
7.62670254
1729_at
8.212080925
1773_at
5.086641912
177_at
5.020014764
179_at
8.715894326
1861_at
5.374527479
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136350.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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