GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM136350 Query DataSets for GSM136350
Status Public on Sep 30, 2007
Title LCM stroma sample from patient #14
Sample type RNA
Source name human breast cancer stroma
Organism Homo sapiens
Characteristics diagnosis: non-IBC
status: Alive
patient_id: 14
race: European American
tnm_stage: IIIA
er_status: N/A
tissue: Stroma
Extracted molecule total RNA
Extraction protocol PicoPure kit (Arcturus)
Label biotin
Label protocol Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Chemo: Yes, ER: U, Her2Neu: U, Stage: IIIA
Data processing RMA
Submission date Sep 15, 2006
Last update date Feb 17, 2016
Contact name Stefan Ambs
Organization name NCI
Street address 37 Convent Dr Bldg 37 Room 3050
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL96
Series (1)
GSE5847 Tumor and stroma from breast by LCM
Reanalyzed by GSE47561

Data table header descriptions
VALUE RMA log 2 expression levels

Data table
1007_s_at 10.0297985
1053_at 4.81528855
117_at 5.993771571
121_at 8.171259898
1255_g_at 3.965057153
1294_at 8.158667985
1316_at 6.504238883
1320_at 4.509119439
1405_i_at 7.687586852
1431_at 3.925222546
1438_at 6.66396059
1487_at 6.960286589
1494_f_at 6.436979955
1598_g_at 10.14561166
160020_at 7.62670254
1729_at 8.212080925
1773_at 5.086641912
177_at 5.020014764
179_at 8.715894326
1861_at 5.374527479

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM136350.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap