|
| Status |
Public on May 06, 2014 |
| Title |
I080 |
| Sample type |
genomic |
| |
|
| Source name |
whole blood, healthy
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: peripheral blood lymphocytes
gender: M
twin: MZ
age: 12
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted from peripheral blood lymphocytes by the salt precipitation method
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
samples were scanned using an Illumina bead array reader
|
| Data processing |
GenomeStudio Methylation Module v1.8
Raw data file: raw_data_signal_intensities.txt contains Unmethylated and methylated signal intensities
Processed data file: average_beta.txt: Normalised Average Beta (Normalised to internal controls, background subtraction) and the Detection P-value
|
| |
|
| Submission date |
Mar 21, 2014 |
| Last update date |
May 06, 2014 |
| Contact name |
Allan F McRae |
| E-mail(s) |
a.mcrae@uq.edu.au
|
| Organization name |
University of Queensland
|
| Department |
Queensland Brain Institute
|
| Lab |
Centre of Neurogenetics and Statistical Genomics
|
| Street address |
QBI Building (#79)
|
| City |
St Lucia |
| State/province |
QLD |
| ZIP/Postal code |
4072 |
| Country |
Australia |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE56105 |
Brisbane Systems Genetics Study – DNA methylation data |
|
