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Sample GSM1325144 Query DataSets for GSM1325144
Status Public on Aug 04, 2014
Title OSKM_d7_3
Sample type RNA
Source name TRA-1-60 (+) cells on day 7
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 7
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 7
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 10.140583
(+)E1A_r60_3 -6.2133303
(+)E1A_r60_a104 -5.995785
(+)E1A_r60_a107 -2.6167483
(+)E1A_r60_a135 0.4837513
(+)E1A_r60_a20 1.7502403
(+)E1A_r60_a22 3.189972
(+)E1A_r60_a97 5.59575
(+)E1A_r60_n11 7.6500063
(+)E1A_r60_n9 8.611448
3xSLv1 -6.2471976
A_19_P00315452 0.57113075
A_19_P00315459 -1.8025556
A_19_P00315469 -5.769043
A_19_P00315473 -6.0601945
A_19_P00315482 -4.9282513
A_19_P00315490 -6.2681894
A_19_P00315492 -5.237034
A_19_P00315493 -3.4658265
A_19_P00315496 -6.1881266

Total number of rows: 42545

Table truncated, full table size 1000 Kbytes.

Supplementary file Size Download File type/resource
GSM1325144_OSKM_d7_3.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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