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Sample GSM129658

Query DataSets for GSM129658

Status

Public on Sep 08, 2006

Title

MAQC_QGN_1_B2

Sample type

RNA

Source name

MAQC sample B, i.e., Ambion Human Brain Reference RNA (HBRR, Catalog #6050)

Organism

Homo sapiens

Characteristics

MAQC sample

Extracted molecule

total RNA

Label

Luminescence

Label protocol

The QuantiGene(R) assays were performed according to the procedure of QuantiGene(R) Reagent System (Panomics). It is a branched DNA (bDNA) technology.

Description

Data processing

Background signals were determined in the absence of RNA samples and subtracted from signals obtained in the presence of RNA samples. Because QuantiGene(R) assay measures RNA directly, no data normalization against a reference gene is required in the data analysis.

Submission date

Aug 22, 2006

Last update date

Sep 01, 2006

Contact name

Leming Shi

E-mail(s)

lemingshi@fudan.edu.cn

Phone

+86-18616827008

Organization name

Fudan University

Department

School of Life Sciences

Lab

Center for Pharmacogenomics

Street address

2005 Songhu Road

City

Shanghai

ZIP/Postal code

200438

Country

China

Platform ID

GPL4098

Series (1)

GSE5350

MicroArray Quality Control (MAQC) Project

Data table header descriptions
ID_REF	Manufacturer's 'Feature_id'
VALUE	Background-subtracted luminescence signal
Flag_Detection	"A": VALUE < LOD; "P": VALUE >= LOD. LOD = limit of detection of the assay, and equals to "Background + 3SD of Background".

Data table
ID_REF	VALUE	Flag_Detection
1	0.922	P
2	0.3495	P
3	13.691	P
4	0.4325	P
5	4.35425	P
6	16.40225	P
7	8.574	P
8	0.2515	P
9	99.26375	P
10	9.84275	P
11	4.09925	P
12	5.66275	P
13	398.30225	P
14	0.04133333	P
15	0	A
16	343.42875	P
17	0.82475	P
18	69.78775	P
19	41.8265	P
20	38.068	P

Total number of rows: 245

Table truncated, full table size 3 Kbytes.

Supplementary data files not provided