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Sample GSM129652 Query DataSets for GSM129652
Status Public on Sep 08, 2006
Title MAQC_TAQ_1_D3
Sample type RNA
 
Source name MAQC sample D, i.e., MAQC samples A and B mixed at 25%:75% ratio (A:B).
Organism Homo sapiens
Characteristics MAQC sample

Extracted molecule total RNA
Label FAM
Label protocol Each TaqMan(R) Assay was run in four replicates for each RNA sample using 10 ng total cDNA (measured as total input RNA) in a 10 ul final volume. Assays were run with 2X Universal Master Mix (without UNG) on Applied Biosystems 7900 Fast Real-Time PCR System using universal cycling conditions (10 min. at 95C; 15 sec. at 95C; 1 min. at 60C for 40 cycles).
 
Description NA
Data processing POLR2A was chosen as the reference gene and each replicate CT was subtracted from the average POLR2A CT to give the log2 difference (delta CT), the normalized value. For delta CT calculations, a CT value of 35 was used for any replicate that had CT > 35.
 
Submission date Aug 22, 2006
Last update date Sep 12, 2008
Contact name Leming Shi
E-mail(s) lemingshi@fudan.edu.cn
Phone +86-18616827008
Organization name Fudan University
Department School of Life Sciences
Lab Center for Pharmacogenomics
Street address 2005 Songhu Road
City Shanghai
ZIP/Postal code 200438
Country China
 
Platform ID GPL4097
Series (1)
GSE5350 MicroArray Quality Control (MAQC) Project

Data table header descriptions
ID_REF Manufacturer's 'Feature_id'
VALUE Normalized expression value, i.e., 2^(CT of POLR2A minus CT of the tested gene).
Flag_Detection "A": CT>35; "P": CT<=35

Data table
ID_REF VALUE Flag_Detection
1 0.00278347 P
2 0.01160285 P
3 3.36303782 P
4 0.1962752 P
5 0.08103061 P
6 0.32945979 P
7 5.32470497 P
8 0.01149663 P
9 0.66444789 P
10 0.26150306 P
11 0.00038369 A
12 0.32299948 P
13 0.00038369 A
14 0.00061461 P
15 0.36529171 P
16 1.90533177 P
17 0.02106969 P
18 0.08977064 P
19 0.24376835 P
20 0.04198842 P

Total number of rows: 1044

Table truncated, full table size 17 Kbytes.




Supplementary data files not provided

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