NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1291129 Query DataSets for GSM1291129
Status Public on Sep 18, 2014
Title A2780
Sample type RNA
 
Source name Ovarian cancer cell-line
Organism Homo sapiens
Characteristics cell line: A2780
morphology: Round
Growth protocol Cell lines were grown according to standard conditions (RPMI-1640 glutamax-Gibco/Invitrogen- supplemented with 10% FCS, 100 U/ml penicillin, 100 µg/ml streptomycin, 50 µg/ml gentamycin).
Extracted molecule total RNA
Extraction protocol Cells were directly lysed in the culture flasks and total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were processed using Affymetrix software Expression Console with default analysis settings and RMA as normalization method.
 
Submission date Dec 17, 2013
Last update date Sep 19, 2014
Contact name Marcel Smid
Organization name Erasmus MC
Department Medical Oncology
Street address Dr. Molewaterplein 50
City Rotterdam
ZIP/Postal code PO Box 2040, 3000CA
Country Netherlands
 
Platform ID GPL5175
Series (1)
GSE53418 Ovarian Cancer Cell line Panel (OCCP): gene expression data.

Data table header descriptions
ID_REF
VALUE RMA 2log signal intensity

Data table
ID_REF VALUE
3948543 7.34
3063807 7.08
3096575 7.16
2949118 7.28
3227645 8.69
4014076 4.67
2637819 2.21
3850234 8.15
3719161 8.15
2916345 7.7
2342904 5.83
3817464 7.4
2408437 7.2
3932148 6.66
3375091 6.38
3653619 8.18
2818035 5.1
3063795 6.37
2359282 9.8
2981874 5.94

Total number of rows: 22011

Table truncated, full table size 278 Kbytes.




Supplementary file Size Download File type/resource
GSM1291129_A2780.CEL.gz 21.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap