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Sample GSM128616 Query DataSets for GSM128616
Status Public on Mar 23, 2015
Title 1586_d_2
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 11257.7705 136.7490 G 116.1858 11337.7705 4512.0000 12425.0596 159 14.2283201217651 97.5830816376544 80.7083 80.0000 11.7221 124
1002 1 599.7738 7.2855 G 6.9734 679.7738 842.0000 310.2039 84 10.3417663574219 97.4810694417805 80.8249 80.0000 11.6540 183
1003 1 0.4200 0.0051 L 0.8018 82.4200 81.0000 11.0074 50 7.97884559631348 102.792609876394 82.9815 82.0000 13.8617 112
1004 1 16.3646 0.1988 L 0.9773 96.3646 98.0000 17.4655 96 11.0558128356934 98.6005870796492 81.6824 80.0000 12.4004 176
1005 1 1.6860 0.0205 L 0.8364 85.6860 86.0000 11.5711 86 10.4641580581665 102.451363239245 84.2412 84.0000 12.3009 176
1006 1 21.9375 0.2665 G 1.0395 106.9375 100.0000 30.2184 64 9.02703380584717 102.871394468254 86.6833 85.0000 11.9143 124
1007 1 23.7619 0.2886 L 0.9836 106.7619 93.0000 31.6628 63 8.95623207092285 108.54333006946 86.6833 83.0000 17.0289 124
1008 1 11769.4121 142.9640 G 107.7459 11855.4121 6989.0000 11794.3867 162 14.3619222640991 110.031225843017 90.1583 86.0000 16.0208 124
1009 1 290.1798 3.5248 G 3.5540 375.1798 416.0000 125.7846 89 10.6451082229614 105.564672143811 87.1758 85.0000 13.7098 188
1010 1 607.2727 7.3766 G 6.2424 692.2727 806.0000 312.9777 88 10.5851345062256 110.898287524869 87.5934 85.0000 17.2655 188
1011 1 107.2436 1.3027 G 1.9017 189.2436 193.0000 43.0986 78 9.96557521820068 99.5125144568276 82.8400 82.0000 11.6750 181
1012 1 111.7848 1.3579 G 1.9143 191.7848 196.0000 43.7882 79 10.0292530059814 100.185352743511 83.0714 80.0000 13.4569 188
1013 1 40.0517 0.4865 G 1.2079 124.0517 125.0000 12.9194 58 8.59348011016846 102.701500638935 85.1154 84.0000 12.4677 188
1014 1 21.3846 0.2598 L 0.9534 107.3846 104.0000 15.2208 39 7.04672574996948 112.627817891522 90.6044 86.0000 17.7519 188
1015 1 11315.3760 137.4488 G 105.1230 11404.3760 6450.0000 11556.6934 135 13.1105813980103 108.486019780412 89.4066 89.0000 12.9907 188
1016 1 62.6136 0.7606 G 1.2550 151.6136 151.0000 20.2453 44 7.48482084274292 120.811990356146 92.6429 89.0000 21.2080 188
1017 1 27.8444 0.3382 G 1.0941 118.8444 119.0000 11.5681 45 7.56939744949341 108.621231325302 90.7857 91.0000 11.7475 188
1018 1 36.0204 0.4375 G 1.1891 120.0204 117.0000 17.6375 49 7.89865398406982 100.936127585625 85.1374 84.0000 11.2908 188
1019 1 22.6304 0.2749 G 1.0680 106.6304 104.0000 13.4639 46 7.65303993225098 99.8403297468924 84.9396 84.0000 10.5602 188
1020 1 39.9143 0.4848 G 1.0037 130.9143 134.0000 17.0619 35 6.67558097839355 130.430467978467 97.1978 91.0000 26.2870 188

Total number of rows: 54359

Table truncated, full table size 6570 Kbytes.




Supplementary file Size Download File type/resource
GSM128616.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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