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Sample GSM128612 Query DataSets for GSM128612
Status Public on Mar 23, 2015
Title 1244_d_2
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13682.3896 264.3139 G 140.4774 13762.3896 4432.0000 15240.4795 156 14.093451499939 97.9687086934887 80.6833 80.0000 11.9791 124
1002 1 779.2045 15.0525 G 9.4378 856.2045 1041.0000 444.1363 88 10.5851345062256 90.7208900998541 76.8421 77.0000 9.1473 158
1003 1 6.2791 0.1213 L 0.9036 83.2791 83.0000 13.1932 86 10.4641580581665 92.1595602907649 78.4545 77.0000 10.1064 171
1004 1 11.7714 0.2274 L 0.9500 92.7714 94.0000 15.7681 35 6.67558097839355 97.657123022979 80.5197 81.0000 11.1047 158
1005 1 0.0494 0.0010 L 0.8298 80.0494 80.0000 11.7861 81 10.1554126739502 96.4706286639644 79.5885 80.0000 10.9804 234
1006 1 24.5625 0.4745 G 1.1124 100.5625 100.0000 12.5497 48 7.81764030456543 90.3980474573481 77.3778 76.0000 9.5987 186
1007 1 14.4054 0.2783 L 0.9933 92.4054 95.0000 11.4572 37 6.86366271972656 93.0252381156968 78.3901 78.0000 10.0168 188
1008 1 15020.6328 290.1658 G 150.0313 15102.6328 6792.0000 16028.8496 168 14.6254653930664 100.663196050874 82.9583 82.0000 12.4421 124
1009 1 246.1512 4.7551 G 3.5880 323.1512 338.0000 105.0303 86 10.4641580581665 90.0636086770553 77.0604 77.0000 8.7091 188
1010 1 563.3977 10.8836 G 7.0620 638.3977 744.0000 284.1082 88 10.5851345062256 90.3992359781683 75.8297 75.0000 10.2662 188
1011 1 71.8904 1.3888 G 1.6237 146.8904 147.0000 24.9638 73 9.64087581634521 90.4659797247666 75.3681 75.0000 10.3107 188
1012 1 42.6885 0.8246 G 1.2647 120.6885 117.0000 15.5527 61 8.81292343139648 95.4261270606244 78.6813 78.0000 11.6174 188
1013 1 48.0294 0.9278 G 1.3419 125.0294 123.0000 16.8741 68 9.30485343933105 93.174214505884 76.9835 77.0000 10.7828 188
1014 1 20.8667 0.4031 G 1.0534 98.8667 99.0000 13.9182 45 7.56939744949341 93.8530440059991 77.9231 78.0000 10.5687 188
1015 1 14460.3018 279.3414 G 151.2486 14538.3018 5459.0000 15570.6982 141 13.3987598419189 96.1218761065875 79.9000 78.0000 12.0813 124
1016 1 87.3014 1.6865 G 1.8243 163.3014 172.0000 42.9283 73 9.64087581634521 89.5145614674554 76.2692 76.0000 9.0097 188
1017 1 24.2340 0.4681 G 1.1140 102.2340 102.0000 11.2972 47 7.73577785491943 91.773926569839 77.3681 78.0000 9.1826 188
1018 1 4.9310 0.0953 L 0.8848 80.9310 81.0000 11.2104 87 10.5248203277588 91.4685207051483 76.5484 76.0000 10.3123 192
1019 1 8.3939 0.1622 L 0.9245 84.3939 82.0000 14.9604 33 6.48204469680786 91.2875393609915 75.8286 76.0000 10.1917 144
1020 1 7.6429 0.1476 L 0.9204 86.6429 85.0000 13.5433 84 10.3417663574219 94.139255089183 78.5833 79.0000 10.0928 186

Total number of rows: 54359

Table truncated, full table size 6540 Kbytes.




Supplementary file Size Download File type/resource
GSM128612.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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