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Sample GSM128597 Query DataSets for GSM128597
Status Public on Apr 30, 2007
Title 2788_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6580.7061 155.3773 G 64.6370 6668.7061 5363.0000 5950.6084 145 13.5874843597412 103.171710990999 88.0750 88.0000 10.1145 124 155.3773
1002 1 183.9412 4.3430 G 2.6765 269.9412 285.0000 73.0164 85 10.4031419754028 100.85502886738 87.0220 86.0000 9.9034 188 4.3430
1003 1 37.1111 0.8762 G 1.2421 122.1111 115.0000 42.2915 63 8.95623207092285 98.3132786552473 85.1044 85.0000 8.8755 188 0.8762
1004 1 27.3571 0.6459 G 1.1386 114.3571 114.0000 13.1739 56 8.444016456604 100.43802286974 87.4451 87.0000 8.9587 188 0.6459
1005 1 26.2281 0.6193 G 1.1152 113.2281 108.0000 20.0902 57 8.51907634735107 101.529530893563 87.6703 87.0000 9.6864 188 0.6193
1006 1 27.4219 0.6475 G 1.1406 114.4219 114.0000 12.1717 64 9.02703380584717 100.313202348472 86.9725 87.0000 8.8755 188 0.6475
1007 1 24.4925 0.5783 G 1.1084 112.4925 112.0000 12.6354 67 9.23618125915527 101.489406405973 88.1978 88.0000 8.9929 188 0.5783
1008 1 6707.4326 158.3695 G 66.2489 6794.4326 4408.0000 6199.9985 150 13.8197660446167 102.559138786871 87.8500 87.0000 10.3728 124 158.3695
1009 1 284.8409 6.7254 G 3.6784 371.8409 408.0000 122.6292 88 10.5851345062256 101.086830912514 86.7569 87.0000 9.3912 187 6.7254
1010 1 124.5063 2.9397 G 2.1317 209.5063 225.0000 53.7241 79 10.0292530059814 98.2817558740896 85.0659 85.0000 8.8545 188 2.9397
1011 1 34.4776 0.8141 G 1.1998 119.4776 119.0000 14.2078 67 9.23618125915527 99.5795140106688 84.5934 85.0000 9.7197 188 0.8141
1012 1 30.0656 0.7099 G 1.1559 116.0656 115.0000 14.1848 61 8.81292343139648 100.409392209982 85.9945 86.0000 9.6063 188 0.7099
1013 1 29.4032 0.6942 G 1.1470 115.4032 114.0000 15.1364 62 8.88486671447754 100.613211168104 86.4890 86.0000 9.7421 188 0.6942
1014 1 20.5085 0.4842 G 1.0708 106.5085 105.0000 9.6557 59 8.66724491119385 99.4630252836138 86.5275 86.0000 8.9754 188 0.4842
1015 1 7084.0132 167.2609 G 70.8599 7171.0132 6127.0000 6148.5190 151 13.8657550811768 101.199886129555 87.5167 87.0000 9.4666 124 167.2609
1016 1 42.0676 0.9933 G 1.2853 127.0676 129.0000 15.5419 74 9.70668506622314 98.8622659021363 84.7308 85.0000 9.2415 188 0.9933
1017 1 25.8214 0.6097 G 1.0770 112.8214 113.0000 11.5296 56 8.444016456604 104.753065423935 89.2473 87.0000 11.8354 188 0.6097
1018 1 18.7872 0.4436 G 1.0480 105.7872 104.0000 12.3546 47 7.73577785491943 100.941959440199 86.4505 87.0000 9.2946 188 0.4436
1019 1 19.9231 0.4704 G 1.0622 104.9231 106.0000 10.5244 52 8.1368579864502 98.7760366276351 85.1044 85.0000 9.1840 188 0.4704
1020 1 22.2419 0.5252 G 1.0751 109.2419 110.0000 10.2291 62 8.88486671447754 101.610102068288 87.5119 87.0000 9.7401 174 0.5252

Total number of rows: 54359

Table truncated, full table size 6925 Kbytes.




Supplementary file Size Download File type/resource
GSM128597.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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