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Sample GSM128596 Query DataSets for GSM128596
Status Public on Apr 30, 2007
Title 2518_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 8587.5996 178.7988 G 82.8826 8676.5996 9504.0000 7164.4033 162 14.3619222640991 104.685399946058 89.4500 89.0000 10.4569 124 178.7988
1002 1 189.3093 3.9415 G 2.6252 276.3093 291.0000 65.4386 97 11.1132459640503 105.250969502218 88.1124 87.0000 12.1673 184 3.9415
1003 1 23.2778 0.4847 G 1.0504 111.2778 110.0000 21.9439 72 9.57461452484131 105.94236092298 89.1316 88.0000 11.9616 118 0.4847
1004 1 35.9610 0.7487 G 1.1645 123.9610 115.0000 60.4443 77 9.90148735046387 106.454412871246 89.4944 88.0000 12.3029 184 0.7487
1005 1 22.4366 0.4671 G 1.0780 110.4366 110.0000 17.6904 71 9.50789165496826 102.44834379647 88.5249 88.0000 9.6322 187 0.4671
1006 1 44.9333 0.9355 G 1.3091 131.9333 116.0000 73.4483 75 9.77204990386963 100.780476104662 88.2079 87.0000 9.1870 184 0.9355
1007 1 27.3444 0.5693 G 1.1266 112.3444 110.0000 16.8128 90 10.7047443389893 99.7178444451428 86.2917 85.0000 9.8119 124 0.5693
1008 1 8841.5088 184.0853 G 88.5155 8928.5088 9183.0000 7441.8804 173 14.8415107727051 100.86944391795 87.1131 87.0000 9.2463 229 184.0853
1009 1 184.3700 3.8387 G 2.7114 269.3700 279.0000 70.7816 102 11.396071434021 99.3472326763528 85.1696 85.0000 9.5648 177 3.8387
1010 1 146.4066 3.0483 G 2.3431 231.4066 235.0000 57.4345 91 10.7640514373779 98.7617641567079 86.4070 85.0000 9.1745 178 3.0483
1011 1 65.3571 1.3608 G 1.4424 153.3571 133.0000 85.4389 98 11.1703834533691 106.323033493351 88.2083 88.0000 12.2154 124 1.3608
1012 1 31.8596 0.6633 G 1.0502 118.8596 119.0000 14.7142 57 8.51907634735107 113.17723658151 89.3000 87.0000 17.4515 186 0.6633
1013 1 42.8387 0.8919 G 1.1984 132.8387 123.0000 51.6484 62 8.88486671447754 110.847781098463 92.0385 90.0000 13.8985 188 0.8919
1014 1 27.0448 0.5631 G 1.0871 117.0448 118.0000 14.4867 67 9.23618125915527 107.66986072614 90.5165 90.0000 11.7799 188 0.5631
1015 1 9489.5684 197.5783 G 88.5573 9580.5684 11860.0000 7417.6084 164 14.4503040313721 108.185024418956 91.8705 91.0000 11.4567 232 197.5783
1016 1 29.9200 0.6230 G 1.1140 119.9200 117.0000 16.9814 75 9.77204990386963 107.650455348729 91.5967 90.0000 11.7670 187 0.6230
1017 1 34.1538 0.7111 G 1.2106 122.1538 119.0000 18.7754 78 9.96557521820068 100.90326783767 88.1381 88.0000 8.6022 187 0.7111
1018 1 41.1184 0.8561 G 1.2241 130.1184 108.0000 92.7485 76 9.83698177337646 106.299857424447 88.8667 89.0000 11.5332 124 0.8561
1019 1 16.4737 0.3430 L 0.9215 107.4737 108.0000 14.2325 38 6.95579624176025 116.634722763513 92.5385 91.0000 17.0898 188 0.3430
1020 1 56.0727 1.1675 G 1.2617 145.0727 121.0000 97.3658 55 8.36828422546387 114.984139108186 92.4800 89.0000 17.3228 181 1.1675

Total number of rows: 54359

Table truncated, full table size 6932 Kbytes.




Supplementary file Size Download File type/resource
GSM128596.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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