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Sample GSM128586 Query DataSets for GSM128586
Status Public on Apr 30, 2007
Title 2315_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6762.1987 111.8875 G 69.4861 6846.1987 4335.0000 6187.8291 143 13.4934520721436 98.5261844948439 83.9667 84.0000 9.6841 124 111.8875
1002 1 349.1895 5.7777 G 4.5602 432.1895 509.0000 185.7398 95 10.9980792999268 94.775245152552 83.7747 83.0000 7.8502 188 5.7777
1003 1 17.4091 0.2881 G 1.0248 101.4091 100.0000 12.0516 44 7.48482084274292 98.9590500278376 84.8315 84.0000 9.9727 184 0.2881
1004 1 31.0000 0.5129 G 1.1585 116.0000 117.0000 12.0996 55 8.36828422546387 100.132459304791 85.7418 85.0000 10.0883 188 0.5129
1005 1 19.0000 0.3144 G 1.0234 105.0000 105.0000 12.5677 37 6.86366271972656 102.603953030706 86.1758 86.0000 11.0693 188 0.3144
1006 1 29.3774 0.4861 G 1.1388 114.3774 113.0000 10.3909 53 8.21472454071045 100.437808422517 84.9780 85.0000 10.2919 188 0.4861
1007 1 32.9851 0.5458 G 1.1946 114.9851 114.0000 20.5836 67 9.23618125915527 96.250391885933 82.8268 82.0000 9.5003 185 0.5458
1008 1 6970.9785 115.3419 G 72.9461 7053.9785 5716.0000 6236.8418 143 13.4934520721436 96.7012246275125 83.5250 83.0000 9.1342 124 115.3419
1009 1 225.9419 3.7384 G 3.2607 305.9419 328.0000 95.5008 86 10.4641580581665 93.8273665849171 81.0289 80.0000 9.2182 179 3.7384
1010 1 210.6329 3.4851 G 3.0405 293.6329 334.0000 111.4421 79 10.0292530059814 96.5739955885652 83.5000 83.0000 9.0493 184 3.4851
1011 1 62.3428 1.0315 G 1.4954 145.3428 143.0000 24.3902 70 9.44069766998291 97.1935358971606 83.9944 83.0000 9.4624 185 1.0315
1012 1 49.5455 0.8198 G 1.3775 133.5455 137.0000 18.9426 66 9.16699600219727 96.9498180666384 84.6593 84.0000 8.6332 188 0.8198
1013 1 32.5286 0.5382 G 1.1807 117.5286 116.0000 13.4140 70 9.44069766998291 99.5436405326624 85.3204 85.0000 9.6958 187 0.5382
1014 1 16.7805 0.2777 G 1.0153 103.7805 103.0000 12.9172 41 7.22515201568604 102.220818636545 87.3571 87.0000 10.1472 188 0.2777
1015 1 6876.0259 113.7709 G 68.6774 6963.0259 3672.0000 6751.3633 158 14.1835060119629 101.387477294519 87.6833 87.0000 9.5916 124 113.7709
1016 1 49.1644 0.8135 G 1.3162 134.1644 134.0000 14.2512 73 9.64087581634521 101.931880178832 86.4066 85.0000 11.2879 188 0.8135
1017 1 29.4576 0.4874 G 1.1413 114.4576 115.0000 12.8661 59 8.66724491119385 100.289696727492 84.3333 85.0000 10.1931 186 0.4874
1018 1 17.7869 0.2943 G 1.0426 102.7869 102.0000 12.7654 61 8.81292343139648 98.5838514316251 83.8462 85.0000 9.0559 188 0.2943
1019 1 17.5000 0.2896 G 1.0506 101.5000 100.0000 12.8669 52 8.1368579864502 96.6106879929995 84.8297 84.0000 8.4071 188 0.2896
1020 1 26.0400 0.4309 G 1.1349 110.0400 110.0000 12.2261 50 7.97884559631348 96.9614625734867 84.3901 84.0000 8.6410 188 0.4309

Total number of rows: 54359

Table truncated, full table size 6931 Kbytes.




Supplementary file Size Download File type/resource
GSM128586.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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