NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128569 Query DataSets for GSM128569
Status Public on Apr 30, 2007
Title 1688_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 23716.2891 276.7125 G 238.2462 23800.2891 12524.0000 25260.6992 161 14.3175268173218 99.8978681804138 85.6417 84.0000 10.5986 124 276.7125
1002 1 1114.0404 12.9982 G 11.9459 1197.0404 1352.0000 642.0194 101 11.3400707244873 100.205013524455 85.1667 83.0000 11.4700 186 12.9982
1003 1 1.7000 0.0198 L 0.8311 89.7000 90.0000 14.8147 30 6.18038702011108 107.931934405001 87.0507 88.0000 13.2880 142 0.0198
1004 1 2.0361 0.0238 L 0.8539 87.0361 87.0000 12.5184 83 10.2800235748291 101.924204886445 84.4684 85.0000 11.2828 196 0.0238
1005 1 4.8485 0.0566 L 0.8811 86.8485 87.0000 13.0014 33 6.48204469680786 98.572847699144 82.3407 82.0000 11.0486 188 0.0566
1006 1 22.2368 0.2595 G 1.0498 106.2368 105.0000 15.6532 38 6.95579624176025 101.198213909765 84.9341 84.0000 11.4655 188 0.2595
1007 1 50.9714 0.5947 G 1.3335 134.9714 135.0000 19.0930 70 9.44069766998291 101.214212474829 84.8297 84.0000 11.4761 188 0.5947
1008 1 23205.9238 270.7578 G 215.2473 23295.9238 12074.0000 24275.3047 146 13.6342573165894 108.228646377079 88.2083 90.0000 12.1524 124 270.7578
1009 1 469.6180 5.4793 G 5.5022 552.6180 606.0000 262.3682 89 10.6451082229614 100.43619417333 83.4066 83.0000 11.6241 188 5.4793
1010 1 673.9268 7.8631 G 7.8128 756.9268 869.0000 408.3653 82 10.2179079055786 96.8823398084289 81.9725 83.0000 9.2549 188 7.8631
1011 1 81.1216 0.9465 G 1.6539 166.1216 165.0000 34.2443 74 9.70668506622314 100.440039670641 83.7967 85.0000 10.2934 188 0.9465
1012 1 37.8947 0.4421 G 1.2097 118.8947 117.0000 15.1862 57 8.51907634735107 98.2878143122025 81.5440 81.0000 11.5252 188 0.4421
1013 1 48.5781 0.5668 G 1.3365 129.5781 127.0000 19.1514 64 9.02703380584717 96.9507923352707 82.3022 81.0000 10.6339 188 0.5668
1014 1 7.7326 0.0902 L 0.9064 90.7326 89.0000 14.1351 86 10.4641580581665 100.107631241841 83.8632 83.0000 11.4051 196 0.0902
1015 1 22032.8711 257.0711 G 210.4288 22120.8711 7349.0000 24032.1328 157 14.1385507583618 105.122836969163 87.8571 88.0000 11.4152 123 257.0711
1016 1 16.1190 0.1881 L 0.9751 101.1190 104.0000 12.8549 42 7.3127326965332 103.702460000345 85.8833 85.0000 12.4683 186 0.1881
1017 1 9.8421 0.1148 L 0.9285 96.8421 97.0000 14.7140 38 6.95579624176025 104.30451298426 86.2473 87.0000 11.5363 188 0.1148
1018 1 7.9884 0.0932 L 0.8927 89.9884 87.0000 12.7238 86 10.4641580581665 100.810115557204 84.0822 82.0000 12.5401 227 0.0932
1019 1 0.6327 0.0074 L 0.7299 84.6327 86.0000 11.3240 49 7.89865398406982 115.955360257772 87.6864 84.0000 21.3036 122 0.0074
1020 1 46.1270 0.5382 G 1.2697 131.1270 129.0000 18.0682 63 8.95623207092285 103.273393291589 85.6740 85.0000 12.1823 187 0.5382

Total number of rows: 54359

Table truncated, full table size 6997 Kbytes.




Supplementary file Size Download File type/resource
GSM128569.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap