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Sample GSM128563 Query DataSets for GSM128563
Status Public on Mar 23, 2015
Title 1348_d_1
Sample type RNA
 
Source name biopsy, during treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 12286.5146 165.0342 G 131.2452 12363.5146 6091.0000 12608.0938 208 16.2737159729004 94.201645660893 78.1860 77.0000 11.4678 223
1002 1 751.9203 10.0999 G 8.6464 830.9203 878.0000 427.8513 115 12.1005182266235 96.1004325761293 78.4867 79.0000 11.4003 117
1003 1 7.4516 0.1001 L 0.8794 87.4516 88.0000 15.4874 31 6.2825493812561 99.4470558053075 82.0659 80.0000 12.9647 188
1004 1 21.9783 0.2952 G 1.0255 104.9783 110.0000 20.9777 46 7.65303993225098 102.369542933361 83.2692 83.0000 12.9130 188
1005 1 16.5250 0.2220 L 0.9962 92.5250 92.0000 15.4693 40 7.13649654388428 92.8740177794073 76.8462 76.0000 11.2493 188
1006 1 16.4286 0.2207 G 1.0207 93.4286 98.0000 13.1754 49 7.89865398406982 91.5321470861763 76.2527 77.0000 9.6881 188
1007 1 18.3774 0.2468 G 1.0300 91.3774 90.0000 13.1425 53 8.21472454071045 88.7193644112965 74.6044 73.0000 10.4796 188
1008 1 12382.2578 166.3203 G 133.9475 12458.2578 6293.0000 12671.9248 202 16.037281036377 93.0084851588891 77.8053 76.0000 11.3390 234
1009 1 297.9604 4.0022 G 4.1160 373.9604 401.0000 128.1381 103 11.4517974853516 90.8555527996133 76.0064 76.0000 9.9037 162
1010 1 724.8571 9.7364 G 8.9072 799.8571 890.0000 408.6149 98 11.1703834533691 89.7985854900361 75.3605 75.0000 9.8657 153
1011 1 67.4545 0.9061 G 1.5917 141.4545 144.0000 20.4854 77 9.90148735046387 88.871477188223 73.9070 74.0000 9.9143 178
1012 1 109.1852 1.4666 G 2.0275 184.1852 184.0000 44.9749 81 10.1554126739502 90.841551984194 75.4835 75.0000 10.5610 188
1013 1 31.0435 0.4170 G 1.1848 108.0435 111.0000 14.5128 69 9.37302112579346 91.1898623017931 76.6868 77.0000 9.4599 188
1014 1 30.2609 0.4065 G 1.1801 104.2609 106.0000 13.0046 69 9.37302112579346 88.3511054096293 74.9066 74.0000 9.5674 188
1015 1 13532.7500 181.7739 G 142.8645 13611.7500 7028.0000 13767.9961 232 17.1869602203369 95.2773317380788 79.1416 79.0000 10.8516 227
1016 1 13.6190 0.1829 L 0.9725 93.6190 93.0000 13.6294 42 7.3127326965332 96.2688794120997 80.1387 80.0000 10.8459 179
1017 1 4.4375 0.0596 L 0.8822 80.4375 80.0000 10.0029 32 6.38307666778564 91.1827889102611 77.2191 76.0000 10.1219 184
1018 1 11.9333 0.1603 L 0.9795 86.9333 89.0000 14.2102 45 7.56939744949341 88.7552616802678 75.5988 75.0000 9.1702 168
1019 1 3.3846 0.0455 L 0.8679 82.3846 83.0000 12.4272 91 10.7640514373779 94.9261822844955 78.4091 79.0000 10.6175 182
1020 1 35.7358 0.4800 G 1.1089 120.7358 116.0000 25.3654 53 8.21472454071045 108.877180931077 88.1883 85.0000 15.9181 160

Total number of rows: 54359

Table truncated, full table size 6581 Kbytes.




Supplementary file Size Download File type/resource
GSM128563.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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