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Sample GSM128548 Query DataSets for GSM128548
Status Public on Mar 23, 2015
Title 2775_d_2
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5446.4731 126.0679 G 52.4199 5537.4731 3865.0000 5114.5234 152 13.9115924835205 105.636768075969 91.4667 91.0000 9.7578 124
1002 1 193.8642 4.4873 G 2.6307 286.8642 291.0000 65.6216 81 10.1554126739502 109.042943336344 91.9725 93.0000 10.6953 188
1003 1 25.0161 0.5790 G 1.1060 114.0161 114.0000 14.2007 62 8.88486671447754 103.089273251675 90.4505 89.0000 9.3928 188
1004 1 23.9855 0.5552 G 1.1075 113.9855 114.0000 12.6966 69 9.37302112579346 102.920665879192 90.8771 90.0000 8.6138 185
1005 1 23.7458 0.5496 G 1.0944 111.7458 110.0000 12.4609 59 8.66724491119385 102.102801491669 88.0220 88.0000 9.4019 188
1006 1 24.7833 0.5737 G 1.1034 113.7833 114.0000 11.3829 60 8.74038791656494 103.12395548081 89.3297 89.0000 9.4160 188
1007 1 24.5634 0.5686 G 1.0986 111.5634 110.0000 11.2984 71 9.50789165496826 101.554032791183 88.2707 87.0000 9.7027 187
1008 1 5762.1885 133.3756 G 57.5757 5850.1885 4568.0000 5226.8862 156 14.093451499939 101.608586474961 89.6583 88.0000 9.0724 124
1009 1 229.9770 5.3232 G 3.1441 317.9770 341.0000 99.5706 87 10.5248203277588 101.13345560616 88.5000 88.0000 8.7556 186
1010 1 138.6538 3.2094 G 2.2209 226.6538 232.0000 62.9100 78 9.96557521820068 102.056558127911 88.9833 88.0000 9.3710 186
1011 1 26.2344 0.6072 G 1.1102 115.2344 115.0000 12.1408 64 9.02703380584717 103.793471332929 88.5824 89.0000 9.8623 188
1012 1 35.4219 0.8199 G 1.2154 123.4219 125.0000 13.7441 64 9.02703380584717 101.546617202624 88.7033 88.0000 9.0311 188
1013 1 20.1818 0.4671 G 1.0458 110.1818 110.0000 10.9114 55 8.36828422546387 105.360839465034 90.4598 90.0000 10.2406 180
1014 1 26.4545 0.6123 G 1.1101 114.4545 114.0000 12.6042 55 8.36828422546387 103.102932585582 87.7857 88.0000 10.0686 188
1015 1 5881.0508 136.1269 G 57.9412 5970.0508 5366.0000 5220.6572 159 14.2283201217651 103.036285720869 90.3083 89.0000 9.3575 124
1016 1 36.1324 0.8363 G 1.2023 125.1324 118.0000 29.9921 68 9.30485343933105 104.074543610749 89.1209 89.0000 10.0497 188
1017 1 35.5200 0.8222 G 1.2082 123.5200 120.0000 19.5805 75 9.77204990386963 102.232660613315 88.8626 88.0000 9.4884 188
1018 1 22.4923 0.5206 G 1.0954 108.4923 109.0000 14.5095 65 9.09728336334229 99.047264651598 86.7308 86.0000 8.6982 188
1019 1 22.1803 0.5134 G 1.0879 108.1803 107.0000 10.1956 61 8.81292343139648 99.439018042807 86.4457 86.0000 8.9593 181
1020 1 26.7206 0.6185 G 1.1136 115.7206 115.0000 11.8989 68 9.30485343933105 103.92032923594 89.3409 89.0000 9.9469 182

Total number of rows: 54359

Table truncated, full table size 6550 Kbytes.




Supplementary file Size Download File type/resource
GSM128548.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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