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Sample GSM128543 Query DataSets for GSM128543
Status Public on Apr 30, 2007
Title 2774_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5413.4536 109.1028 G 54.0580 5501.4536 2980.0000 5335.9116 163 14.4061803817749 101.769393387477 87.5417 88.0000 9.1796 124 109.1028
1002 1 195.4286 3.9387 G 2.7718 281.4286 300.0000 70.4608 84 10.3417663574219 101.532437435978 86.8516 86.0000 10.3550 188 3.9387
1003 1 22.9844 0.4632 G 1.0946 109.9844 110.0000 11.8829 64 9.02703380584717 100.482550631675 87.9780 87.0000 8.9884 188 0.4632
1004 1 31.4464 0.6338 G 1.1566 118.4464 118.0000 14.0584 56 8.444016456604 102.409786477382 87.3631 87.0000 10.2732 185 0.6338
1005 1 30.5410 0.6155 G 1.1471 117.5410 115.0000 23.8008 61 8.81292343139648 102.464672530469 87.5495 87.0000 10.3098 188 0.6155
1006 1 24.3077 0.4899 G 1.1044 109.3077 110.0000 12.2900 65 9.09728336334229 98.9709783231675 85.7697 85.0000 9.3140 184 0.4899
1007 1 33.4429 0.6740 G 1.2053 118.4429 117.0000 14.1205 70 9.44069766998291 98.2675567448584 85.7198 85.0000 8.8450 188 0.6740
1008 1 5928.9351 119.4918 G 58.9459 6015.9351 4437.0000 5657.4800 156 14.093451499939 102.058550564482 87.3667 87.0000 10.0390 124 119.4918
1009 1 125.4940 2.5292 G 2.1019 213.4940 223.0000 50.0121 83 10.2800235748291 101.573414145117 87.5843 88.0000 9.0489 184 2.5292
1010 1 134.4744 2.7102 G 2.2122 222.4744 231.0000 56.9698 78 9.96557521820068 100.568325613172 89.2000 88.0000 8.3789 181 2.7102
1011 1 39.2500 0.7910 G 1.2463 125.2500 125.0000 16.3059 72 9.57461452484131 100.497637379534 86.8791 86.0000 9.6651 188 0.7910
1012 1 35.4237 0.7139 G 1.1863 123.4237 121.0000 15.4220 59 8.66724491119385 104.043183587728 88.4696 88.0000 10.6955 187 0.7139
1013 1 25.8800 0.5216 G 1.1063 110.8800 111.0000 12.4611 75 9.77204990386963 100.225393144304 86.0112 85.0000 10.1503 185 0.5216
1014 1 70.7568 1.4260 G 1.5374 156.7568 157.0000 23.7070 74 9.70668506622314 101.959567139141 86.8187 86.0000 10.6397 188 1.4260
1015 1 6388.6772 128.7575 G 61.4018 6477.6772 4870.0000 5873.0938 157 14.1385507583618 105.49658557169 88.5083 89.0000 10.9977 124 128.7575
1016 1 37.1918 0.7496 G 1.2249 122.1918 123.0000 14.5796 73 9.64087581634521 99.7552629174109 86.5549 85.0000 9.8368 188 0.7496
1017 1 28.7273 0.5790 G 1.1435 114.7273 112.0000 14.8829 66 9.16699600219727 100.330453009141 85.5000 86.0000 9.5536 188 0.5790
1018 1 28.2687 0.5697 G 1.1274 114.2687 112.0000 12.8058 67 9.23618125915527 101.359647616445 87.0659 86.0000 10.2398 188 0.5697
1019 1 24.0781 0.4853 G 1.0955 110.0781 110.0000 15.0720 64 9.02703380584717 100.481364854416 85.9341 86.0000 9.6542 188 0.4853
1020 1 30.0923 0.6065 G 1.1613 117.0923 114.0000 17.0454 65 9.09728336334229 100.826592460661 87.0220 87.0000 9.2177 188 0.6065

Total number of rows: 54359

Table truncated, full table size 6946 Kbytes.




Supplementary file Size Download File type/resource
GSM128543.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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