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Sample GSM128531 Query DataSets for GSM128531
Status Public on Apr 30, 2007
Title 2509_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6517.8301 125.0813 G 63.5003 6606.8301 4471.0000 6402.5674 149 13.7736234664917 104.044055631589 89.8083 89.0000 10.0294 124 125.0813
1002 1 211.4756 4.0584 G 2.9121 301.4756 323.0000 87.9632 82 10.2179079055786 103.52454634136 90.1868 90.0000 9.0164 188 4.0584
1003 1 24.5179 0.4705 G 1.0933 115.5179 116.0000 11.7640 56 8.444016456604 105.663558333558 90.5659 91.0000 9.7757 188 0.4705
1004 1 28.8983 0.5546 G 1.1554 117.8983 118.0000 13.7566 59 8.66724491119385 102.037608958898 89.0611 89.0000 8.6917 186 0.5546
1005 1 25.0577 0.4809 G 1.1043 116.0577 113.0000 14.3009 52 8.1368579864502 105.10007572981 90.1215 91.0000 9.4000 187 0.4809
1006 1 33.6034 0.6449 G 1.1766 122.6034 119.0000 18.6168 58 8.59348011016846 104.198904205241 88.2473 89.0000 10.1326 188 0.6449
1007 1 28.9130 0.5549 G 1.1573 116.9130 115.0000 13.9832 69 9.37302112579346 101.02533262037 88.1374 88.0000 8.6836 188 0.5549
1008 1 6730.4546 129.1617 G 67.5505 6816.4546 4192.0000 6601.0044 145 13.5874843597412 100.908973509436 87.1000 86.0000 9.9393 124 129.1617
1009 1 254.1530 4.8774 G 3.3181 343.1530 366.0000 116.0771 85 10.4031419754028 103.419906628846 88.7530 89.0000 9.6133 172 4.8774
1010 1 133.3553 2.5592 G 2.1493 222.3553 231.0000 59.5577 76 9.83698177337646 103.456719593506 89.3187 89.0000 9.6378 188 2.5592
1011 1 103.5875 1.9879 G 1.8451 192.5875 194.0000 45.4149 80 10.0925302505493 104.379963664677 88.7845 89.0000 10.2533 187 1.9879
1012 1 34.5094 0.6623 G 1.1846 123.5094 121.0000 13.6570 53 8.21472454071045 104.26610396417 90.2033 89.0000 10.1774 188 0.6623
1013 1 23.1714 0.4447 G 1.1003 110.1714 110.0000 11.5065 70 9.44069766998291 100.130077618872 87.9503 87.0000 8.7534 187 0.4447
1014 1 25.8358 0.4958 G 1.1203 114.8358 115.0000 12.6957 67 9.23618125915527 102.50148025593 89.4615 89.0000 9.0010 188 0.4958
1015 1 6734.1753 129.2331 G 67.1737 6823.1753 4072.0000 6614.0142 156 14.093451499939 101.575171572539 88.6333 89.0000 8.3834 124 129.2331
1016 1 55.6338 1.0676 G 1.3985 144.6338 143.0000 19.9699 71 9.50789165496826 103.417893767725 89.1319 89.0000 9.6119 188 1.0676
1017 1 39.9130 0.7660 G 1.2545 128.9130 127.0000 16.8469 69 9.37302112579346 102.761556151054 89.6923 89.0000 9.1744 188 0.7660
1018 1 20.5510 0.3944 G 1.0521 109.5510 109.0000 13.6562 49 7.89865398406982 104.129430523464 88.9451 89.0000 10.0863 188 0.3944
1019 1 33.0170 0.6336 G 1.1877 123.0170 117.0000 37.3270 59 8.66724491119385 103.57772000157 90.6703 90.0000 9.0518 188 0.6336
1020 1 24.6769 0.4736 G 1.0993 114.6769 114.0000 12.4507 65 9.09728336334229 104.313584939664 90.1011 90.0000 9.5424 184 0.4736

Total number of rows: 54359

Table truncated, full table size 6942 Kbytes.




Supplementary file Size Download File type/resource
GSM128531.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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