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Sample GSM128523 Query DataSets for GSM128523
Status Public on Mar 23, 2015
Title 1986_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 15033.2031 199.4813 G 158.8412 15115.2031 6926.0000 16644.1797 150 13.8197660446167 95.1592181840678 82.2333 82.0000 8.7728 124
1002 1 895.3372 11.8806 G 10.0905 977.3372 1144.0000 455.8774 86 10.4641580581665 96.8573396856919 82.3556 82.0000 9.9049 186
1003 1 3.5400 0.0470 L 0.8791 82.5400 83.0000 10.6550 50 7.97884559631348 93.8954636235886 80.5750 79.0000 9.9303 124
1004 1 20.0930 0.2666 G 1.0658 97.0930 97.0000 11.5372 43 7.3992772102356 91.0977752007903 77.6047 77.0000 9.3985 178
1005 1 8.5474 0.1134 L 0.9511 85.5474 86.0000 10.6591 95 10.9980792999268 89.9412699867944 77.7098 77.0000 8.6275 201
1006 1 16.8936 0.2242 G 1.0411 96.8936 97.0000 14.2698 47 7.73577785491943 93.0715886358666 80.0659 80.0000 8.7144 188
1007 1 23.2963 0.3091 G 1.1091 103.2963 104.0000 11.1465 54 8.29185962677002 93.1358223735018 80.5275 80.0000 8.7572 188
1008 1 17097.7461 226.8766 G 181.3707 17178.7461 9252.0000 17936.1406 164 14.4503040313721 94.7162238504821 80.6333 81.0000 9.1442 124
1009 1 381.5165 5.0625 G 4.8653 462.5165 525.0000 176.6026 91 10.7640514373779 95.0635428062016 81.1160 81.0000 9.3757 187
1010 1 594.7889 7.8925 G 7.4477 672.7889 802.0000 323.8427 90 10.7047443389893 90.3356237249399 78.4403 78.0000 8.2238 165
1011 1 68.0385 0.9028 G 1.5991 146.0385 150.0000 26.0012 78 9.96557521820068 91.3279252927608 77.5714 78.0000 8.8853 188
1012 1 62.4675 0.8289 G 1.5382 140.4675 142.0000 28.8730 77 9.90148735046387 91.317548771775 77.6703 78.0000 8.8784 188
1013 1 33.9394 0.4504 G 1.2269 109.9394 109.0000 12.5564 66 9.16699600219727 89.609715923202 76.9121 76.0000 9.0731 188
1014 1 39.9403 0.5300 G 1.2967 119.9403 118.0000 14.6031 67 9.23618125915527 92.4979967528826 79.7637 80.0000 8.3320 188
1015 1 15922.0869 211.2763 G 170.8939 16002.0869 7586.0000 16779.6309 129 12.8159236907959 93.6375683600839 80.9890 80.0000 9.0917 188
1016 1 34.6429 0.4597 G 1.2290 113.6429 110.0000 14.1250 56 8.444016456604 92.4653000541617 79.2308 79.0000 8.9769 188
1017 1 39.1875 0.5200 G 1.2746 117.1875 117.0000 14.7964 64 9.02703380584717 91.9392223230946 78.0275 78.0000 9.2928 188
1018 1 15.0000 0.1990 G 1.0039 96.0000 96.0000 16.6417 38 6.95579624176025 95.6283668566315 82.2637 81.0000 9.7522 188
1019 1 5.1176 0.0679 L 0.8831 92.1176 91.0000 11.6840 34 6.57952451705933 104.312458368062 86.2171 87.0000 11.5416 158
1020 1 11.8205 0.1569 L 0.9377 98.8205 97.0000 16.1116 39 7.04672574996948 105.389254273538 87.7747 87.0000 12.2595 188

Total number of rows: 54359

Table truncated, full table size 6548 Kbytes.




Supplementary file Size Download File type/resource
GSM128523.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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