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GEO accession:
Sample GSM128520
Query DataSets for GSM128520
Status
Public on Mar 23, 2015
Title
1850_d_2
Sample type
RNA
Source name
biopsy, during treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
13812.4824
191.3928
G
147.4064
13890.4824
4891.0000
15198.6729
201
15.9975357055664
94.2325680288393
79.1070
78.0000
10.8217
223
1002
1
1007.0265
13.9539
G
11.8171
1083.0265
1262.0000
577.5142
115
12.1005182266235
91.6493101741266
75.9794
76.0000
10.4329
101
1003
1
-5.3103
-0.0736
L
0.7651
75.6897
75.0000
8.9176
29
6.07650756835938
98.9270335966326
80.8299
81.0000
11.9514
153
1004
1
21.6522
0.3000
G
1.0494
101.6522
102.0000
12.3398
46
7.65303993225098
96.8624618656423
79.0944
80.0000
11.2416
186
1005
1
5.0377
0.0698
L
0.8812
82.0377
82.0000
12.7190
53
8.21472454071045
93.0963918611489
77.3153
77.0000
10.7309
115
1006
1
10.1354
0.1404
L
0.9555
85.1354
85.0000
12.1669
96
11.0558128356934
89.1033263672716
75.0089
75.0000
9.4022
232
1007
1
12.4375
0.1723
L
0.9810
88.4375
90.0000
12.0076
32
6.38307666778564
90.1485158230088
76.4444
76.0000
9.4323
186
1008
1
13883.9414
192.3830
G
146.0374
13961.9414
5011.0000
15410.5957
208
16.2737159729004
95.6052254853846
78.1855
78.0000
11.7368
229
1009
1
379.7959
5.2626
G
4.6381
460.7959
514.0000
156.1530
100
11.2837915420532
99.3494621290224
80.9000
81.0000
12.2330
186
1010
1
1353.5909
18.7561
G
15.4020
1429.5909
1733.0000
825.4238
112
11.9416427612305
92.8186616788061
74.6907
76.0000
11.2124
101
1011
1
63.8052
0.8841
G
1.5455
138.8052
135.0000
20.1037
77
9.90148735046387
89.8135465936053
74.9318
75.0000
9.8757
182
1012
1
154.8415
2.1456
G
2.5167
229.8415
241.0000
51.6422
82
10.2179079055786
91.3282526202904
74.8167
75.0000
10.8855
186
1013
1
36.2500
0.5023
G
1.2442
111.2500
111.0000
13.2425
68
9.30485343933105
89.41561389979
74.3187
75.0000
9.6104
188
1014
1
133.1932
1.8456
G
2.2756
209.1932
212.0000
43.6483
88
10.5851345062256
91.9277129615049
76.3407
76.0000
10.6185
188
1015
1
15447.7910
214.0525
G
158.7802
15527.7910
6982.0000
16373.2686
234
17.2608814239502
97.7942451435831
79.9533
80.0000
11.8628
222
1016
1
34.9481
0.4843
G
1.1794
112.9481
111.0000
13.8666
77
9.90148735046387
95.765943345813
79.8634
78.0000
11.8440
167
1017
1
13.2769
0.1840
L
0.9860
88.2769
88.0000
13.2183
65
9.09728336334229
89.5340455717482
75.7788
75.0000
9.6894
108
1018
1
1.9753
0.0274
L
0.7283
81.9753
82.0000
9.7866
81
10.1554126739502
112.564089754171
82.1762
80.0000
21.7094
218
1019
1
5.6364
0.0781
L
0.8750
79.6364
79.0000
12.0046
33
6.48204469680786
91.0134356349401
75.4012
74.0000
11.3423
168
1020
1
9.2787
0.1286
L
0.9245
87.2787
86.0000
14.4473
61
8.81292343139648
94.4081639995149
78.7658
78.0000
10.9388
115
Total number of rows:
54359
Table truncated, full table size
6587 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128520.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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