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Sample GSM128519 Query DataSets for GSM128519
Status Public on Mar 23, 2015
Title 1850_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 19554.6289 259.7556 G 181.0918 19640.6289 14021.0000 19687.8809 150 13.8197660446167 108.456765574677 89.0750 86.0000 14.9712 124
1002 1 984.0408 13.0716 G 10.5718 1066.0408 1178.0000 568.8212 100 11.2837915420532 100.838058460241 82.8059 82.0000 12.5587 176
1003 1 3.1099 0.0413 L 0.8573 84.1099 82.0000 15.9873 91 10.7640514373779 98.1148903769553 81.5158 81.0000 11.4099 229
1004 1 8.7222 0.1159 L 0.9116 87.7222 87.0000 13.6068 36 6.7702751159668 96.2327536749297 79.2108 79.0000 11.4885 172
1005 1 5.5690 0.0740 L 0.8781 87.5690 88.0000 12.8722 58 8.59348011016846 99.7231339339089 82.4404 82.0000 11.8154 113
1006 1 9.8919 0.1314 L 0.9320 89.8919 90.0000 14.6357 37 6.86366271972656 96.4534469795519 79.9780 80.0000 10.9690 188
1007 1 16.8657 0.2240 G 1.0145 96.8657 94.0000 27.7902 67 9.23618125915527 95.479798697283 81.0167 80.0000 10.3199 124
1008 1 19164.5820 254.5744 G 183.5079 19249.5820 9383.0000 20112.5273 165 14.4942932128906 104.897844761675 84.5167 85.0000 13.2652 124
1009 1 360.1522 4.7841 G 4.4996 440.1522 495.0000 161.2387 92 10.8230323791504 97.8194481681942 81.0829 80.0000 11.8796 187
1010 1 1172.7347 15.5781 G 13.0490 1252.7347 1529.0000 704.3577 100 11.2837915420532 96.0026380511397 79.3072 80.0000 10.6684 172
1011 1 47.8000 0.6350 G 1.3327 125.8000 125.0000 16.5198 70 9.44069766998291 94.3974648603695 78.2710 78.0000 10.9316 161
1012 1 34.8644 0.4631 G 1.2187 113.8644 112.0000 17.1073 59 8.66724491119385 93.4325639267419 79.5495 79.0000 9.6217 188
1013 1 28.7258 0.3816 G 1.1209 108.7258 106.0000 13.1225 62 8.88486671447754 96.9953023024174 80.9890 80.0000 11.3302 188
1014 1 120.3537 1.5987 G 2.0708 199.3537 206.0000 44.7370 82 10.2179079055786 96.2679065654807 80.0791 79.0000 11.5119 183
1015 1 20693.3613 274.8821 G 198.1535 20778.3613 9369.0000 21407.7969 174 14.8843431472778 104.859899873643 87.7429 85.0000 13.2399 109
1016 1 30.3929 0.4037 G 1.0816 113.3929 112.0000 16.1916 56 8.444016456604 104.842769835524 84.7267 83.0000 14.5618 178
1017 1 1.1091 0.0147 L 0.8332 86.1091 85.0000 13.9031 55 8.36828422546387 103.342148960624 84.9167 85.0000 12.2281 124
1018 1 21.3333 0.2834 G 1.0376 103.3333 103.0000 15.3619 60 8.74038791656494 99.585383714152 83.1556 82.0000 11.7236 186
1019 1 10.8649 0.1443 L 0.9278 92.8649 87.0000 22.6658 37 6.86366271972656 100.092681395321 83.8846 82.0000 12.0618 188
1020 1 17.4423 0.2317 G 1.0076 100.4423 101.0000 12.2292 52 8.1368579864502 99.6869839785485 83.1928 83.0000 11.1247 172

Total number of rows: 54359

Table truncated, full table size 6597 Kbytes.




Supplementary file Size Download File type/resource
GSM128519.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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