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Sample GSM128514 Query DataSets for GSM128514
Status Public on Sep 28, 2010
Title 1846_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13553.4785 115.3516 G 139.5121 13636.4785 7351.0000 13833.5605 188 15.4715557098389 97.7440558499803 82.9211 83.0000 9.8294 236
1002 1 1168.4059 9.9441 G 12.5597 1253.4059 1370.0000 669.7751 103 11.4517974853516 99.7954516117569 84.8187 85.0000 9.8636 188
1003 1 -0.8621 -0.0073 L 0.8387 86.1379 87.0000 9.2726 29 6.07650756835938 102.70419178001 87.5549 87.0000 10.4695 188
1004 1 14.3902 0.1225 G 1.0092 97.3902 100.0000 11.0605 41 7.22515201568604 96.5039281680759 83.0879 83.0000 9.0026 188
1005 1 7.0370 0.0599 L 0.9263 89.0370 88.0000 12.9671 54 8.29185962677002 96.1217473512356 82.5250 82.0000 9.4145 124
1006 1 23.5000 0.2000 G 1.0909 105.5000 107.0000 11.3541 54 8.29185962677002 96.7055828960356 81.6648 82.0000 9.8037 188
1007 1 20.6500 0.1757 G 1.0768 101.6500 101.0000 12.7342 60 8.74038791656494 94.4007769031614 81.1264 81.0000 8.9339 188
1008 1 10495.5557 89.3261 G 110.8907 10576.5557 4335.0000 11265.0488 200 15.957691192627 95.3781753558904 81.3585 81.0000 9.5855 220
1009 1 410.2632 3.4917 G 5.1963 492.2632 545.0000 183.4441 95 10.9980792999268 94.7331882535877 82.6959 82.0000 8.4888 177
1010 1 707.6264 6.0225 G 8.4417 787.6264 795.0000 372.0478 91 10.7640514373779 93.3021978859959 80.3132 80.0000 8.8681 188
1011 1 83.1190 0.7074 G 1.7404 164.1190 163.0000 27.9500 84 10.3417663574219 94.2974401826866 80.9231 81.0000 8.8650 188
1012 1 83.5789 0.7113 G 1.7530 164.5789 164.0000 30.3373 76 9.83698177337646 93.8831212546906 81.6813 81.0000 8.5887 188
1013 1 45.6234 0.3883 G 1.3268 126.6234 125.0000 15.0842 77 9.90148735046387 95.4370078860428 82.1326 81.0000 9.6247 187
1014 1 15.6591 0.1333 G 1.0199 98.6591 100.0000 10.0520 44 7.48482084274292 96.7379842612606 82.6243 83.0000 9.1587 187
1015 1 14639.3330 124.5931 G 152.6446 14721.3330 7576.0000 15008.9268 217 16.6220626831055 96.441909474821 82.2222 82.0000 9.6279 233
1016 1 72.6744 0.6185 G 1.6006 154.6744 152.0000 24.3790 86 10.4641580581665 96.6358086241686 81.3833 82.0000 9.7572 186
1017 1 28.4384 0.2420 G 1.1547 107.4384 108.0000 13.0730 73 9.64087581634521 93.0413106868982 79.2541 79.0000 9.3609 187
1018 1 6.5172 0.0555 L 0.9173 88.5172 87.0000 11.3804 87 10.5248203277588 96.493563285592 82.3349 82.0000 9.6624 217
1019 1 10.2051 0.0869 L 0.9468 93.2051 93.0000 11.7434 39 7.04672574996948 98.4436176539709 83.8757 83.0000 10.2957 175
1020 1 10.2076 0.0869 L 0.9156 96.2076 94.0000 13.4828 53 8.21472454071045 105.077438497994 88.1417 86.0000 12.7183 124

Total number of rows: 54359

Table truncated, full table size 6592 Kbytes.




Supplementary file Size Download File type/resource
GSM128514.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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