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Sample GSM128501 Query DataSets for GSM128501
Status Public on Sep 28, 2010
Title 1591_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 16502.8613 174.0808 G 137.7390 16599.8613 10476.0000 16492.1641 213 16.4681510925293 120.51682556282 97.2844 97.0000 15.6779 219
1002 1 942.0813 9.9376 G 8.4083 1034.0813 1150.0000 476.7730 125 12.6156625747681 122.983991174021 94.4255 92.0000 20.6560 96
1003 1 -0.3333 -0.0035 L 0.8079 81.6667 81.0000 15.3021 30 6.18038702011108 101.085239985906 82.3357 82.0000 12.7235 147
1004 1 5.4063 0.0570 L 0.8766 88.4063 87.0000 10.8653 32 6.38307666778564 100.846881384475 83.6243 83.0000 11.8979 187
1005 1 4.0185 0.0424 L 0.8756 82.0185 83.0000 11.3030 54 8.29185962677002 93.6690563112723 77.7833 78.0000 10.4460 124
1006 1 24.2143 0.2554 G 1.0764 103.2143 102.0000 11.9563 56 8.444016456604 95.8875907227084 79.6923 79.0000 11.2584 188
1007 1 -0.4848 -0.0051 L 0.8162 84.5152 82.0000 13.5806 33 6.48204469680786 103.54527879247 85.0229 85.0000 12.3635 181
1008 1 16707.6094 176.2406 G 151.5299 16794.6094 9374.0000 16905.5762 214 16.506763458252 110.8336503649 88.1372 87.0000 15.8891 234
1009 1 334.5225 3.5287 G 4.1875 417.5225 444.0000 143.6115 113 11.9948348999023 99.70617834326 83.1101 83.0000 11.1375 113
1010 1 839.5000 8.8555 G 9.7433 918.5000 1098.0000 461.0129 116 12.1530151367188 94.2701442216635 78.6250 79.0000 10.1801 124
1011 1 76.3978 0.8059 G 1.6441 155.3978 150.0000 22.3034 93 10.8816947937012 94.5208050366563 78.7747 79.0000 10.3472 188
1012 1 72.7250 0.7671 G 1.6084 150.7250 149.0000 23.1592 80 10.0925302505493 93.709673610773 77.7418 78.0000 10.4731 188
1013 1 41.7500 0.4404 G 1.2454 121.7500 123.0000 15.7532 80 10.0925302505493 97.760171407874 81.1923 80.0000 11.8401 188
1014 1 55.2439 0.5827 G 1.3784 137.2439 136.0000 18.3712 82 10.2179079055786 99.5676279379983 81.8827 82.0000 11.7118 168
1015 1 17045.1270 179.8009 G 155.4278 17131.1270 11583.0000 16438.6602 234 17.2608814239502 110.219197974969 89.1574 86.0000 16.1461 224
1016 1 196.4083 2.0718 G 2.7948 281.4083 296.0000 65.3532 122 12.4633550643921 100.690173539698 85.7373 85.0000 10.4601 122
1017 1 18.3146 0.1932 G 1.0351 101.3146 101.0000 14.0109 89 10.6451082229614 97.8756597252972 83.9292 83.0000 9.9171 117
1018 1 -2.2000 -0.0232 L 0.7941 81.8000 85.0000 13.5607 30 6.18038702011108 103.014140368421 86.0056 84.0000 12.6761 186
1019 1 0.6265 0.0066 L 0.8437 84.6265 81.0000 12.1454 83 10.2800235748291 100.308713798481 83.3743 84.0000 10.8725 177
1020 1 33.6400 0.3549 G 1.1847 115.6400 114.0000 14.3793 75 9.77204990386963 97.6076820854342 83.2471 82.0000 10.4051 180

Total number of rows: 54359

Table truncated, full table size 6618 Kbytes.




Supplementary file Size Download File type/resource
GSM128501.TXT.gz 2.7 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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