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Sample GSM128497 Query DataSets for GSM128497
Status Public on Apr 30, 2007
Title 1583_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14583.3389 199.2259 G 126.5430 14676.3389 7288.0000 15066.4492 173 14.8415107727051 115.979052041071 93.5167 93.0000 15.3194 124 199.2259
1002 1 867.8687 11.8561 G 9.0505 955.8687 1069.0000 459.1307 101 11.3400707244873 105.614918042357 87.7020 88.0000 11.7433 157 11.8561
1003 1 18.5556 0.2535 G 1.0110 108.5556 106.0000 17.2392 36 6.7702751159668 107.37318107738 89.4080 90.0000 11.5821 129 0.2535
1004 1 7.4000 0.1011 L 0.8894 86.4000 86.0000 12.8406 50 7.97884559631348 97.143485716863 79.9417 79.0000 12.0957 124 0.1011
1005 1 5.6563 0.0773 L 0.8850 84.6563 83.0000 12.3202 32 6.38307666778564 95.65913869501 79.3791 79.0000 11.1061 188 0.0773
1006 1 8.3208 0.1137 L 0.9358 89.3208 91.0000 12.4367 53 8.21472454071045 95.4506114098414 80.0678 81.0000 9.6337 122 0.1137
1007 1 6.5977 0.0901 L 0.9004 88.5977 86.0000 13.4570 87 10.5248203277588 98.3943044975053 81.1330 82.0000 10.9295 226 0.0901
1008 1 13672.0420 186.7765 G 135.5980 13756.0420 5901.0000 14986.4609 192 15.6352806091309 101.447239704947 85.0083 84.0000 11.6315 124 186.7765
1009 1 457.2659 6.2468 G 5.6785 536.2659 611.0000 221.3150 94 10.9400415420532 94.4379366982739 79.0705 79.0000 10.2920 162 6.2468
1010 1 729.0652 9.9599 G 8.8922 805.0652 904.0000 388.8855 92 10.8230323791504 90.5357223599524 77.1384 76.0000 9.6905 165 9.9599
1011 1 68.9367 0.9418 G 1.5959 143.9367 143.0000 25.4117 79 10.0292530059814 90.1923221664528 75.8462 75.0000 10.1282 188 0.9418
1012 1 71.0800 0.9710 G 1.5985 148.0800 149.0000 29.6642 75 9.77204990386963 92.6372481082295 77.4615 77.0000 10.4248 188 0.9710
1013 1 33.1970 0.4535 G 1.1903 111.1970 112.0000 12.5193 66 9.16699600219727 93.415659565962 78.7857 78.0000 10.2771 188 0.4535
1014 1 23.7679 0.3247 G 1.0805 99.7679 100.0000 12.7363 56 8.444016456604 92.3306728612207 77.2308 76.0000 10.8871 188 0.3247
1015 1 13778.6279 188.2326 G 141.9335 13857.6279 5158.0000 15270.3613 230 17.1127166748047 97.6346718338653 80.4813 79.0000 12.4231 222 188.2326
1016 1 26.7286 0.3651 G 1.1025 107.7286 107.0000 14.5817 70 9.44069766998291 97.7148190033873 80.9931 81.0000 11.1432 152 0.3651
1017 1 8.9821 0.1227 L 0.9238 84.9821 84.0000 13.2240 56 8.444016456604 91.9956645181538 77.1279 76.0000 10.6638 88 0.1227
1018 1 5.9706 0.0816 L 0.9024 82.9706 84.0000 10.7689 34 6.57952451705933 91.9410527027727 77.6090 77.0000 9.9607 137 0.0816
1019 1 4.3721 0.0597 L 0.8588 94.3721 92.0000 15.7658 86 10.4641580581665 109.887410205982 90.6271 90.0000 13.2583 183 0.0597
1020 1 39.0930 0.5341 C 1.0761 137.0930 138.0000 23.9377 86 10.4641580581665 127.393018715599 100.2277 98.0000 19.5954 105 0.5341

Total number of rows: 54359

Table truncated, full table size 6962 Kbytes.




Supplementary file Size Download File type/resource
GSM128497.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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