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Sample GSM128491 Query DataSets for GSM128491
Status Public on Mar 23, 2015
Title 1351_d_2
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13384.8613 189.8361 G 141.1923 13464.8613 4696.0000 14829.0195 146 13.6342573165894 95.3653935187687 80.6484 80.0000 10.2436 188
1002 1 863.8214 12.2515 G 10.2986 938.8214 1132.0000 475.5132 84 10.3417663574219 91.160478644889 75.2034 75.0000 10.7737 183
1003 1 4.3636 0.0619 L 0.8863 80.3636 79.0000 11.1676 33 6.48204469680786 90.6738789088991 75.3483 76.0000 9.7826 184
1004 1 6.3167 0.0896 L 0.8999 83.3167 82.0000 12.9274 60 8.74038791656494 92.5800289207097 76.8417 77.0000 10.3867 124
1005 1 5.1228 0.0727 L 0.9252 79.1228 79.0000 12.1049 57 8.51907634735107 85.5199594388178 74.3739 74.0000 7.6800 119
1006 1 19.6122 0.2782 G 1.0622 94.6122 93.0000 11.8232 49 7.89865398406982 89.0693924575763 75.3571 75.0000 9.3796 188
1007 1 20.6250 0.2925 G 1.0763 95.6250 95.0000 12.2643 56 8.444016456604 88.8461823451913 74.9176 75.0000 9.2308 188
1008 1 13550.3643 192.1834 G 141.8004 13629.3643 3286.0000 15909.3857 172 14.7985544204712 96.1165742748219 80.0177 79.0000 11.4111 117
1009 1 387.2184 5.4919 G 5.1589 462.2184 535.0000 198.2526 87 10.5248203277588 89.5959703626145 76.3077 75.0000 9.7306 188
1010 1 543.4943 7.7083 G 7.1128 616.4943 746.0000 330.2396 87 10.5248203277588 86.6734252624641 74.3462 73.0000 9.1156 188
1011 1 106.9750 1.5172 G 2.0448 179.9750 182.0000 40.9283 80 10.0925302505493 88.0148254172797 74.2967 73.0000 10.0099 188
1012 1 99.9861 1.4181 G 1.9622 173.9861 180.0000 45.2676 72 9.57461452484131 88.6675614619959 73.9011 74.0000 9.7784 188
1013 1 48.4697 0.6874 G 1.3714 123.4697 124.0000 17.2383 66 9.16699600219727 90.0325589740238 75.0335 75.0000 10.0217 185
1014 1 74.3014 1.0538 G 1.6616 149.3014 152.0000 27.1816 73 9.64087581634521 89.8535632334322 75.1758 75.0000 9.9024 188
1015 1 12751.5723 180.8542 G 130.6346 12832.5723 3373.0000 14786.5713 147 13.6808700561523 98.2325929094374 80.4917 81.0000 11.4884 124
1016 1 37.3898 0.5303 G 1.2462 112.3898 111.0000 14.4492 59 8.66724491119385 90.1879139995399 75.7418 75.0000 10.1253 188
1017 1 18.7200 0.2655 G 1.0511 94.7200 95.0000 11.9148 50 7.97884559631348 90.1185310264387 75.7308 76.0000 9.4124 188
1018 1 19.1951 0.2722 G 1.0588 96.1951 96.0000 12.9845 41 7.22515201568604 90.8525801247842 77.6040 77.0000 9.2351 155
1019 1 10.2121 0.1448 L 0.9599 85.2121 87.0000 12.8009 33 6.48204469680786 88.7700566397092 75.3691 75.0000 9.1800 155
1020 1 27.7292 0.3933 G 1.1316 104.7292 104.0000 12.9514 48 7.81764030456543 92.5517561492535 76.1374 77.0000 10.3678 188

Total number of rows: 54359

Table truncated, full table size 6564 Kbytes.




Supplementary file Size Download File type/resource
GSM128491.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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