|
| Status |
Public on Mar 03, 2015 |
| Title |
genomic DNA from peripheral blood, subject affected by Down syndrome, 1002 |
| Sample type |
genomic |
| |
|
| Source name |
peripheral whole blood, subject 1002
|
| Organism |
Homo sapiens |
| Characteristics |
group: subject affected by Down syndrome (DS)
disease state: Down syndrome
family: 02
gender: Male
age: 18
tissue: peripheral whole blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from peripheral whole blood using the QIAamp 96 DNA Blood Kit (QIAGEN)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
GenomeStudio (2010.3) Methylation module (1.8.5) software
raw_data.txt includes Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Nov 20, 2013 |
| Last update date |
Mar 03, 2015 |
| Contact name |
Maria Giulia Bacalini |
| E-mail(s) |
mugiu17@hotmail.com
|
| Phone |
00390512094748
|
| Organization name |
IRCCS Istituto delle Scienze Neurologiche di Bologna
|
| Department |
Brain Aging Laboratory
|
| Street address |
Via Altura 3
|
| City |
Bologna |
| ZIP/Postal code |
40139 |
| Country |
Italy |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE52588 |
Identification of a DNA methylation signature in blood from subjects affected by Down syndrome |
|
