|
| Status |
Public on May 01, 2014 |
| Title |
WB_20_KIL_500086 |
| Sample type |
RNA |
| |
|
| Source name |
Whole Blood from patient with Active TB
|
| Organism |
Homo sapiens |
| Characteristics |
illness: active tuberculosis (culture confirmed)
hiv status: HIV positive
geographical region: Kenya
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
|
| Label |
biotin
|
| Label protocol |
Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
|
| |
|
| Hybridization protocol |
Standard Illumina hybridisation protocol.
|
| Scan protocol |
Standard Illumina scanning protocol.
|
| Data processing |
The data were normalised using Genome Studio, with background subtracted and quantile normalised.
|
| |
|
| Submission date |
Oct 23, 2013 |
| Last update date |
May 01, 2014 |
| Contact name |
Victoria Wright |
| E-mail(s) |
v.wright@imperial.ac.uk
|
| Organization name |
Imperial College London
|
| Department |
Paediatrics
|
| Lab |
Wright Fleming Institute
|
| Street address |
Norfolk Place
|
| City |
London |
| ZIP/Postal code |
W2 1PG |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL10558 |
| Series (2) |
| GSE39939 |
Genome wide transcriptional profiling of HIV positive and negative children with active tuberculosis, latent TB infection and other diseases from Kenya |
| GSE39941 |
Genome wide transcriptional profiling of HIV positive and negative children with active tuberculosis, latent TB infection and other diseases |
|
